View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20383_low_12 (Length: 232)
Name: NF20383_low_12
Description: NF20383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20383_low_12 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: scaffold0236 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 24030 - 23833
Alignment:
| Q |
11 |
agaagaactaaaagccattgttagagttattccattatggtctagtgcgatcatgatgacccttagcatgggaggttcatttggattgcttcaagctaaa |
110 |
Q |
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| T |
24030 |
agaagaactaaaagccattgttagagttattccattatggtctagtgggatcatgatgacccttagcgtgggaggttcatttggattgcttcaagctaaa |
23931 |
T |
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| Q |
111 |
accttgaacagacatatcacctccaactttgaagttccagcgggatctttgagcgttattagtatagttacaataattatatggatagttctctatga |
208 |
Q |
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| T |
23930 |
accttgaacagacatatcacctccaactttgaagttccagcgggatctttgagtgttattattatagttactttaattatatggatagttttctatga |
23833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 25273698 - 25273901
Alignment:
| Q |
11 |
agaagaactaaaagccattgttagagttattccattatggtctagtgcgatcatgatgacccttagcatgggaggttcatttggattgcttcaagctaaa |
110 |
Q |
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| T |
25273698 |
agaagaatttaaagccattgttagagttattccattatggtctagtgggatcatgatgacccttagcatgggaagttcatttggattgcttcaagctaaa |
25273797 |
T |
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| Q |
111 |
accttgaacagacatatcacctccaactttgaagttccagcgggatctttgagcgttattagtatagttacaataattatatggatagttctctatgacc |
210 |
Q |
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| T |
25273798 |
accttgaacagacatatcacctccaactttgaagttccagcgggatctttgagtgttatcaatataggtacggtaattatatggatagttttctatgatc |
25273897 |
T |
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| Q |
211 |
gcgt |
214 |
Q |
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|||| |
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| T |
25273898 |
gcgt |
25273901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 43728302 - 43728502
Alignment:
| Q |
11 |
agaagaactaaaagccattgttagagttattccattatggtctagtgcgatcatgatgacccttagcatgggaggttcatttggattgcttcaagctaaa |
110 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| | |||||||||| | |||| ||| || || |||||||||||||| ||||||||| |
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| T |
43728302 |
agaagaactaaaagcccttgttagagttattccattatggtctacagggatcatgatgtctcttaacattggtggatcatttggattgctgcaagctaaa |
43728401 |
T |
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| Q |
111 |
accttgaacagacatatcacctccaactttgaagttccagcgggatctttgagcgttattagtatagttacaataattatatggatagttctctatgacc |
210 |
Q |
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| T |
43728402 |
tccttagacagacatatcacctcaaactttgaagtaccagcaggatcttttagtgttatcatggtaggttcaatatttatatggatagtactctacgacc |
43728501 |
T |
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| Q |
211 |
g |
211 |
Q |
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| T |
43728502 |
g |
43728502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 43703592 - 43703709
Alignment:
| Q |
12 |
gaagaactaaaagccattgttagagttattccattatggtctagtgcgatcatgatgacccttagcatgggaggttcatttggattgcttcaagctaaaa |
111 |
Q |
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|||||||||||||||||| ||| |||||||||||| ||||| | ||||||| ||| | ||| ||| ||||| |||||||||||||| ||||||||| |
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| T |
43703592 |
gaagaactaaaagccattattaaagttattccattgtggtcaacagcgatcacaatgtctattaacattggaggctcatttggattgctgcaagctaaat |
43703691 |
T |
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| Q |
112 |
ccttgaacagacatatca |
129 |
Q |
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|||| |||||||||||| |
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| T |
43703692 |
ccttagacagacatatca |
43703709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 43714563 - 43714680
Alignment:
| Q |
12 |
gaagaactaaaagccattgttagagttattccattatggtctagtgcgatcatgatgacccttagcatgggaggttcatttggattgcttcaagctaaaa |
111 |
Q |
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|||||||||||||||||| ||| |||||||||||| ||||| | ||||||| ||| | ||| ||| ||||| |||||||||||||| ||||||||| |
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| T |
43714563 |
gaagaactaaaagccattattaaagttattccattgtggtcaacagcgatcacaatgtctattaacattggaggctcatttggattgctgcaagctaaat |
43714662 |
T |
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| Q |
112 |
ccttgaacagacatatca |
129 |
Q |
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|||| |||||||||||| |
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| T |
43714663 |
ccttagacagacatatca |
43714680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 2690339 - 2690479
Alignment:
| Q |
11 |
agaagaactaaaagccattgttagagttattccattatggtctagtgcgatcatgatgacccttagcatgggaggttcatttggattgcttcaagctaaa |
110 |
Q |
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||||||| ||||||| ||| ||| |||||||||||| ||||||| ||| ||||| | |||| ||| ||||| ||||||||||| || ||||| ||| |
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| T |
2690339 |
agaagaattaaaagctattattaaagttattccattgtggtctacaagtatcttgatgtcacttaacattggaggctcatttggattactgcaagcgaaa |
2690438 |
T |
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| Q |
111 |
accttgaacagacatatcacctccaactttgaagttccagc |
151 |
Q |
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| T |
2690439 |
tcgctgaacagacacatcacccgaaacttcgaagttccagc |
2690479 |
T |
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