View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20383_low_2 (Length: 679)
Name: NF20383_low_2
Description: NF20383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20383_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 602; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 19 - 669
Target Start/End: Complemental strand, 35902862 - 35902208
Alignment:
| Q |
19 |
gcctggtacacggacatttgctgcagtgacttgctgcacactgacaatgccaatttcgcaacaaaatgagtcgccagtagcagcaaaacgtgacagtagc |
118 |
Q |
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| T |
35902862 |
gcctggtacgcggacatttgctgcagtgacttgctgcacactgacaatgccaatttcgcaacaaaatgagtcgccaatagcagcaaaacgtgacagtagc |
35902763 |
T |
|
| Q |
119 |
atcagcagtgcgagacagaaaccgtagaccaagaaagaggcagcagcaggccgtgacagaagcatcataattccgcaatagcagctgtagcagacccgga |
218 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35902762 |
atcagcagtgcgagacagcagccgtagaccaagaaagaggcagcagcaggccgtgacagaagcatcataattccgcaatagcagctgtagcagacccgga |
35902663 |
T |
|
| Q |
219 |
agtcagcagtaggccgtgacagaagcagcagcagtccgcgacagcaacagtatgtaatggtcaagcaaataacagagatgaaattgcaagcttcaatgta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35902662 |
agtcagcagtaggccgtgacagaagcagcagcagtccgcgacagcaacagtatgtaatggtcaagcaaataacagagatgaaattgcaagcttcaatgta |
35902563 |
T |
|
| Q |
319 |
acagtgcaatgtgaaagtgaaatctagtatggatattggatagcagtccatttcttagaaaggaaaatagcaatagaagataaaaggaagtagaactact |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35902562 |
acagtgcaatgtgaaagtgaaatctagtatggatattggatagcagtcaatttcttagaaaggaaaatagtaatagaagataaaaggaagtagaactact |
35902463 |
T |
|
| Q |
419 |
tgaggccgttattttgttgtaggaaaggagctttttgcttcaacttcaaggaagctagagtactattctattctagattgcaatacaaactttgaggact |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35902462 |
tgaggccgttattttgttgtaggaaaggagctttttgcttcaacttcaaggaagctagagtaccattctattctagattgcaatacaaactttgaggact |
35902363 |
T |
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| Q |
519 |
gttttgtaagtatacagtacttaaatagattattgtatgtggtatcatgtagaactctgatgt----gaaggcagagaaatcaagttcacccatcctgtt |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
35902362 |
gttttgtaagtatacagtacttaaatagattattgtatgtagtatcatgtagaactctgatgtataagaaggcagagaaatcaagtttacccatcctgtt |
35902263 |
T |
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| Q |
615 |
ttgtgtattatatgtaatattatttgtattttatcattttgattatgtacctatg |
669 |
Q |
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| T |
35902262 |
ttgtgtattatatgtaatattatttgtattttatcattttgattatgtacctatg |
35902208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 430 - 651
Target Start/End: Complemental strand, 35903943 - 35903731
Alignment:
| Q |
430 |
ttttgttgtaggaaaggagctttttgcttcaacttcaaggaagctagagtactattctattctagattgcaatacaaactttgaggactgttttgtaagt |
529 |
Q |
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|||||||||||| ||| |||||||||||||||| ||||||||||||||| ||| ||||| | ||||||||||||||||| || ||| ||| |
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| T |
35903943 |
ttttgttgtagggaag-agctttttgcttcaacgtcaaggaagctagagaact--------ctagagtacaatacaaactttgagggctacttttagagt |
35903853 |
T |
|
| Q |
530 |
atacagtacttaaatagattattgtatgtggtatcatgtagaactctgatgtgaa----ggcagagaaatcaagttcacccatcctgttttgtgtattat |
625 |
Q |
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||||| |||||||||||||||||||| || ||||||| | |||||| | |||||||||||||||||| ||| ||| |||||||||||| |
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| T |
35903852 |
atacaatacttaaatagattattgtaa----tagtctgtagaattttgatgtacaaagaggcagagaaatcaagttcgtccagccttctttgtgtattat |
35903757 |
T |
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| Q |
626 |
atgtaatattatttgtattttatcat |
651 |
Q |
| |
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|||||||||||| |||||| |||||| |
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| T |
35903756 |
atgtaatattatctgtattatatcat |
35903731 |
T |
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