View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20383_low_3 (Length: 572)
Name: NF20383_low_3
Description: NF20383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20383_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 20 - 567
Target Start/End: Complemental strand, 42819271 - 42818723
Alignment:
| Q |
20 |
cggaggagttgacggactcccaactattagtgggccacacggtcctttaattagnnnnnnnnnn-aatctgaatcattgattcacatccaatgactatca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| |||||||| |
|
|
| T |
42819271 |
cggaggagttgacggactcccaactattagtgggccacgcggtcctttaattagtttttttttttaatctgaatcgttgattcacatccaacgactatca |
42819172 |
T |
|
| Q |
119 |
ttgaaagttctcgtttctcatgataaacaagagttctcacatgatatgctcccgctcccttttattgtgttatatatatttttgtttgctatttatcatg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42819171 |
ttgaaagttctcgtttctcatgataaacaagagttctcacatgatatgctcccgttcccttttattgtgttatatatatttttgtttgctatttatcatg |
42819072 |
T |
|
| Q |
219 |
ttggacttgtgtagtggtaaaggctgcaaaattttgcaaaagaagcagggttcgaaccctgtcatggtatttttggtgaattttagaagcaggattaatt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42819071 |
ttggacttgtgtagtggtaaaggctgcaaaattttgcaaaagaagcagggttcgaaccctgtcatggtatttttggtgaattttagaagcaggattaatt |
42818972 |
T |
|
| Q |
319 |
tacaggcagaaaagatgtgctgcacatttaattcgcatagaaatgtatgtgcattgaatgtcagagaaaatcacgtaaattctaaattctgcaatcactt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42818971 |
tacaggcagaaaagatgtgctgcacatttaattcgcctagaaatgtatgtgcattgaatgtcagagaaaataacgtaaattctaaattctgcaatcactt |
42818872 |
T |
|
| Q |
419 |
aaaacttgtgagtcaaccggttcaagttaatgacgtcagaaccgagtccgatgcataaccgatcaaatagtcggatcggactggctatgtgtccgtttaa |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42818871 |
aaaacttgtgagtcaaccggttcaagttaatgacgtcagaaccgagtccgatgcataaccgatcaaatagtcggatcggactggctatgtgtccgtttaa |
42818772 |
T |
|
| Q |
519 |
accagttggaccgggcggtccgtgttttaaaacactggtttgttctgtg |
567 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42818771 |
accagttggaccgggcggtccgtgttttaaaacactggtttgttctgtg |
42818723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University