View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20383_low_4 (Length: 469)
Name: NF20383_low_4
Description: NF20383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20383_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 135 - 454
Target Start/End: Original strand, 9072698 - 9073012
Alignment:
| Q |
135 |
cgctgagacacattgaacttgaattagaaaaataatatgtagatgattacatgaatgaaaaactcacataaaagagacattgaataaagtgaatgaaagc |
234 |
Q |
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| T |
9072698 |
cgctgagacactttgaacttgaattggaaaaataatatgtagatgattacatgaatgaaaaactcacataaaagaggcattgaataaagtgaatgaaagc |
9072797 |
T |
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| Q |
235 |
aaaacaaaaaccatgcattgcannnnnnnnnnattcatcaatacttctacaaaaagaagaagaatagtcacaatgagaaatattcagaaataatgaggat |
334 |
Q |
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| T |
9072798 |
aaaacaaaaaccatgcattgcatttttt----attgatcaatacttctacaaaaagaagaagaatagtcacaatgagaaatattcagaaataatgaggat |
9072893 |
T |
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| Q |
335 |
ggagtttggggaattgtgtaatggaaacaatgacaattagtgataattaattagtggaaaatgggaattgaagaagaatgaggttttggtgtcttttgct |
434 |
Q |
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| T |
9072894 |
ggagtttggggaattgagtaatggaaacaatgacaattagtgataattaattagtggaaaatgggaattgaagaagaatgaggttttggtgtcttttgct |
9072993 |
T |
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| Q |
435 |
aagattatttatgaggtttt |
454 |
Q |
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| T |
9072994 |
aa-attatttatgaggtttt |
9073012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 9072573 - 9072612
Alignment:
| Q |
10 |
atgaacatgattgacgactacaactacaattgcacacctc |
49 |
Q |
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| T |
9072573 |
atgaacatgattgacgactacaactacaattgcacacctc |
9072612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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