View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20383_low_5 (Length: 420)
Name: NF20383_low_5
Description: NF20383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20383_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 22 - 352
Target Start/End: Complemental strand, 36163340 - 36163010
Alignment:
| Q |
22 |
aaataataggtaaacatttttcactcatgcaacgatgttttatagtatatgaattattttggattgaactttgaatttatacgataaactgtatcacaaa |
121 |
Q |
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| T |
36163340 |
aaataatcggtaaacatttttcactcatgcaacgatgttttatagtatatgaattattttggattgaactttgaatttatacgataaactgtatcacaaa |
36163241 |
T |
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| Q |
122 |
cnnnnnnnnngtttgttggcaattttgatacagattgaagcatttactaaagcaatcgaagaatatcctatacattcaaatgggcacataggtgtgccta |
221 |
Q |
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| T |
36163240 |
ctttttttttgtttgttggcaattttgatacagattgaagcatttactaaagcaatcgaagaatatcctatacattcaaatgggcacataggtgtgccta |
36163141 |
T |
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| Q |
222 |
aagatctagctgatattgttgagtcaaccattggagctcttttcattgattgcaactcatccctcgaaattgtgtggaaggtattcactaatttttcaca |
321 |
Q |
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| T |
36163140 |
aagatctagctgatattgttgagtcaaccattggagctcttttcattgattgcaactcatccctcgaaattgtgtggaaggtattcactaatttttcact |
36163041 |
T |
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| Q |
322 |
taatatgatatatttaaaaatccatcaaaag |
352 |
Q |
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| T |
36163040 |
taatatgatatatttaaaaatccatcaaaag |
36163010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 145 - 352
Target Start/End: Complemental strand, 36158118 - 36157912
Alignment:
| Q |
145 |
tttgatacagattgaagcatttactaaagcaatcgaagaatatcctatacattcaaatgggcacataggtgtgcctaaagatctagctgatattgttgag |
244 |
Q |
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| T |
36158118 |
tttgatacagattgaagcatttactaaagcaattgaagattatcctatacattcaaatgggcacatacatgtgcctaaagatctagctgatatggttgag |
36158019 |
T |
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| Q |
245 |
tcaaccattggagctcttttcattgattgcaactcatccctcgaaattgtgtggaaggtattcactaatttttcacataatatgatatatttaaaaatcc |
344 |
Q |
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| T |
36158018 |
tcaacgattggagctctcttcattgattgtgactcatccctcgaaattgtgtggaaggtactcaataatttttcacttattgcgatatattt-aaaatcc |
36157920 |
T |
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| Q |
345 |
atcaaaag |
352 |
Q |
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| T |
36157919 |
atcaaaag |
36157912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 36081399 - 36081325
Alignment:
| Q |
230 |
gctgatattgttgagtcaaccattggagctcttttcattgattgcaactcatccctcgaaattgtgtggaaggta |
304 |
Q |
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| T |
36081399 |
gctgatattgttgagtcaaccatcggtgcaatcttcgttgattgtggctcatccatcgaaactgtgtggaaggta |
36081325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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