View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20383_low_7 (Length: 292)
Name: NF20383_low_7
Description: NF20383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20383_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 40945908 - 40945651
Alignment:
| Q |
21 |
tccatattaatttgttaaaggcacgaataaactatatgattattgatacacttgtataaaatacaa---ataaagcattttataaaataacnnnnnnngt |
117 |
Q |
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| T |
40945908 |
tccatattaatttgttaaaggcttgaaaaacctacatgatttttgatacacttgtataaaatacaacaaataaagcattttcataattaaccaacaaagt |
40945809 |
T |
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| Q |
118 |
taacaaataggaagaggagcaccgttccactctcccaagcattcaagaagaggatcaatgatttttccctgacacatagctgtgaataatttgtcacaca |
217 |
Q |
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| T |
40945808 |
taacaaattggaagaggagcaccgttccactctcccaagcattcaagaagaggatcaatgatttttccctgacacatagctgtgaataatttgtcacaca |
40945709 |
T |
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| Q |
218 |
cttcaccgggtgaaatgacattttctccagttagtaaaccagttcccaactcctctct |
275 |
Q |
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| T |
40945708 |
cttcaccgggtgaaatgacattttctccagttagtaaaccagttcccaactcctctct |
40945651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 35 - 275
Target Start/End: Complemental strand, 40959854 - 40959616
Alignment:
| Q |
35 |
ttaaaggcacgaataaactatatgattattgatacacttgtataaaatacaaataaagcattttataaaataacnnnnnnngttaacaaataggaagagg |
134 |
Q |
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| T |
40959854 |
ttaaaggcatgaaaaaccta-atgattattgttacacttgtataga-tacaaataaaacattttcagaattaaccaacaaagttaacaaattggaagagg |
40959757 |
T |
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| Q |
135 |
agcaccgttccactctcccaagcattcaagaagaggatcaatgatttttccctgacacatagctgtgaataatttgtcacacacttcaccgggtgaaatg |
234 |
Q |
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| T |
40959756 |
agcaccgttccactctcccaagcattcaagaagaggatcaatgatttttccctgacacatagctgtgaataatttgtcacacacttcaccgggtgaaatg |
40959657 |
T |
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| Q |
235 |
acattttctccagttagtaaaccagttcccaactcctctct |
275 |
Q |
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| T |
40959656 |
acattttctccagttagtaaaccagttcccaactcctctct |
40959616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 275
Target Start/End: Original strand, 28183610 - 28183768
Alignment:
| Q |
117 |
ttaacaaataggaagaggagcaccgttccactctcccaagcattcaagaagaggatcaatgatttttccctgacacatagctgtgaataatttgtcacac |
216 |
Q |
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||||||||| ||||||||||| |||||||||||||| | ||||| | ||||||||||| ||||| || || |||||||||||||| |||||||| ||| |
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| T |
28183610 |
ttaacaaattggaagaggagcgccgttccactctccgagacattccataagaggatcaacaattttaccttggcacatagctgtgaacaatttgtcgcac |
28183709 |
T |
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| Q |
217 |
acttcaccgggtgaaatgacattttctccagttagtaaaccagttcccaactcctctct |
275 |
Q |
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| T |
28183710 |
tcttctcctggcgatatcactttttcaccggttagcaacgctgttcccaactcctctct |
28183768 |
T |
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