View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20383_low_8 (Length: 285)
Name: NF20383_low_8
Description: NF20383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20383_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 33372749 - 33372908
Alignment:
| Q |
1 |
tagttacattcttcgtcactgattataagacattttacaataaatattttatccttgaatataagactgtttataaatttttaaatgcatttattatcct |
100 |
Q |
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| T |
33372749 |
tagttgcattcttcgtcactaattataagacattttacaataaatattttatccttgaatataagactctttataaatttttaaatgcatttattatcct |
33372848 |
T |
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| Q |
101 |
ttttataatttgtcttaaaatgtgtaacannnnnnngaacaatagaatgtgtaacattgaa |
161 |
Q |
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| T |
33372849 |
ttttctaatttgtcttaaaatg-gtaacatttttttgaacaatagaatgtgtaacattgaa |
33372908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 172 - 278
Target Start/End: Complemental strand, 25250993 - 25250887
Alignment:
| Q |
172 |
cgtgcaagaacgcggggatatagcaagtaagcagcaagttatcccttcacggaccgactacaacaagctcgcgactctaatagaaacagacggtaagctc |
271 |
Q |
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| T |
25250993 |
cgtgcaagaacacaggggcatatcaagtaagcggcaagttatcccttcacggaccgactacaacaagctcgagactctaatagaaacagacggtaagctc |
25250894 |
T |
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| Q |
272 |
tctgctc |
278 |
Q |
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||||||| |
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| T |
25250893 |
tctgctc |
25250887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 19093787 - 19093711
Alignment:
| Q |
202 |
gcagcaagttatcccttcacggaccgactacaacaagctcgcgactctaatagaaacagacggtaagctctctgctc |
278 |
Q |
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| T |
19093787 |
gcagcaagttatcccttcatggtccgactacaacaagctcgcgactctaatagaaaccgacggtaagctctctgctc |
19093711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 10456748 - 10456786
Alignment:
| Q |
58 |
aatataagactgtttataaatttttaaatgcatttatta |
96 |
Q |
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| T |
10456748 |
aatataagactatttataaatttttagatgcatttatta |
10456786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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