View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20383_low_9 (Length: 281)

Name: NF20383_low_9
Description: NF20383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20383_low_9
NF20383_low_9
[»] chr8 (1 HSPs)
chr8 (19-271)||(9722496-9722748)
[»] chr3 (3 HSPs)
chr3 (147-219)||(25129629-25129702)
chr3 (147-205)||(25579109-25579168)
chr3 (147-220)||(46870323-46870396)
[»] chr1 (1 HSPs)
chr1 (150-215)||(3887796-3887861)
[»] chr4 (2 HSPs)
chr4 (178-217)||(2256501-2256540)
chr4 (157-244)||(17898209-17898299)
[»] chr2 (1 HSPs)
chr2 (147-205)||(43987837-43987896)
[»] chr6 (1 HSPs)
chr6 (147-218)||(24803970-24804039)


Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 9722748 - 9722496
Alignment:
Q  19 catcatggggacacacattaggagcaaagcttcaatcggtgtatgttttgggattacgattgttattgaactgttcttaatttttatcgaatgaatcaaa 118  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9722748 catcatggggacacacattaggagcaatgcttcaatcggtgtatgttttgggattatgattgttattgaactgttcttaatttttatcgaatgaatcaaa 9722649  T
Q  119 atttcaaaatgtagtttctttttgtttgttcaattttggaggggtcaaaattgattgagaggttgtagaattgattttatcacgtttaaatgttttaaag 218  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||    
T  9722648 atttcaaaatgtagtttctttttgttttttcaattttggaggggtcaaaattgatcgaaaggttgtagaattgattttatcacgtttaaatgttttagag 9722549  T
Q  219 gaattagttttacttgtagaattgatagtatttgaggttagaatttgcctatg 271  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9722548 gaattagttttacttgtagaattgatagtacttgaggttagaatttgcctatg 9722496  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 25129702 - 25129629
Alignment:
Q  147 ttcaattttggaggggtcaaaattgattg-agaggttgtagaattgattttatcacgtttaaatgttttaaagg 219  Q
    ||||||||| ||||||||||||||||||  ||||||||||||||||||||||||| ||||  ||| ||||||||    
T  25129702 ttcaattttcgaggggtcaaaattgattctagaggttgtagaattgattttatcatgtttggatgatttaaagg 25129629  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 25579168 - 25579109
Alignment:
Q  147 ttcaattttggaggggtcaaaattgatt-gagaggttgtagaattgattttatcacgttt 205  Q
    ||||||||||||||||||||||||||||  ||||| |||||||||| |||||||| ||||    
T  25579168 ttcaattttggaggggtcaaaattgattctagaggatgtagaattggttttatcaagttt 25579109  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 46870323 - 46870396
Alignment:
Q  147 ttcaattttggaggggtcaaaattgattg-agaggttgtagaattgattttatcacgtttaaatgttttaaagga 220  Q
    ||||||||||||||| |||||| |||||  ||| ||||||||||||||||||||| ||||  ||| |||||||||    
T  46870323 ttcaattttggaggg-tcaaaagtgattatagatgttgtagaattgattttatcatgtttggatgatttaaagga 46870396  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 3887861 - 3887796
Alignment:
Q  150 aattttggaggggtcaaaattgattgagaggttgtagaattgattttatcacgtttaaatgtttta 215  Q
    ||||||| ||||||||||||||||| | ||||||||||||| ||||||||| |||| |||| ||||    
T  3887861 aattttgaaggggtcaaaattgatttaaaggttgtagaattaattttatcatgtttgaatgattta 3887796  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 2256540 - 2256501
Alignment:
Q  178 aggttgtagaattgattttatcacgtttaaatgttttaaa 217  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  2256540 aggttgtagaattgattttatcatgtttaaatgatttaaa 2256501  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 17898299 - 17898209
Alignment:
Q  157 gaggggtcaaaattgattg-agaggttgtagaattgattttatcacgtttaaatgttttaaag--gaattagttttacttgtagaattgat 244  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||| ||||  ||| |||||||   ||||  |||| ||||||||||||||    
T  17898299 gaggggtcaaaattgattctagaggttgtagaattgattgtatcatgtttggatggtttaaagtataattgattttgcttgtagaattgat 17898209  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 43987837 - 43987896
Alignment:
Q  147 ttcaattttggaggggtcaaaattgattg-agaggttgtagaattgattttatcacgttt 205  Q
    ||||||||||||||| ||||| ||||||  ||| ||||||||||||||||||||| ||||    
T  43987837 ttcaattttggagggttcaaagttgattctagaagttgtagaattgattttatcatgttt 43987896  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 24804039 - 24803970
Alignment:
Q  147 ttcaattttggaggggtcaaaattgattgagaggttgtagaattgattttatcacgtttaaatgttttaaag 218  Q
    ||||||||||||||  |||||| ||||  ||||||||||||||||||| ||||| ||||  ||| |||||||    
T  24804039 ttcaattttggagg--tcaaaagtgatctagaggttgtagaattgattatatcatgtttggatgatttaaag 24803970  T

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