View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_high_106 (Length: 368)
Name: NF20384_high_106
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_106 |
 | |
|
| [»] scaffold0425 (3 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 34)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 16 - 352
Target Start/End: Original strand, 6244386 - 6244722
Alignment:
| Q |
16 |
atcagtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcg |
115 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| ||| || ||||||||||||||||||| ||||||| | |||||| |||||||||||||||| | |
|
|
| T |
6244386 |
atcagtcagcatctcaaggttgattaaccctctcatctcctttggcatcttcttaatatgggtgcctttcaaattaagatgacgtaaattgatgagtttg |
6244485 |
T |
|
| Q |
116 |
taaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatct |
215 |
Q |
| |
|
|||||| || ||||||||| | ||||||||| |||| || ||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6244486 |
caaaaatttggcgggagctcaagtagtttaaaacattcttccagtaagagcgtatgcaaattatacaacatacaaatggaattaggtaagcttgtaatct |
6244585 |
T |
|
| Q |
216 |
cagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaaccattgaaagataacatcctcaaata |
315 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
6244586 |
cggtgtaagaaaggtctagatagcgcagaagctttaagtttcttatctcatcagctagctctgagagattgcaaccattgaaagataacttccgtaaata |
6244685 |
T |
|
| Q |
316 |
ttgtagtcttgaatataaattatactgcacgttggtg |
352 |
Q |
| |
|
||||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
6244686 |
ttgtactcttgaatacaaattatactgcacattggtg |
6244722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 6141379 - 6141687
Alignment:
| Q |
16 |
atcagtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcg |
115 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||| || ||||||||||||||||||| ||||||| | |||||| |||||||||| ||||| | |
|
|
| T |
6141379 |
atcagtcagcatctcaggattgattaaccctcttatctcctttggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgacgagtttg |
6141478 |
T |
|
| Q |
116 |
taaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatct |
215 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| |||| || |||||| |||| |||||| |||| | | |||||||||||||||||||||||||||| |
|
|
| T |
6141479 |
caaaaatttgatgggagctcagtcaatttaaaacattcttccagtaagagggtatgcaaattatacagcttacaaatggaattaggtaagcttgtaatct |
6141578 |
T |
|
| Q |
216 |
cagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaaccattgaaagataacatcctcaaata |
315 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
6141579 |
ccgtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagctagctctaagagattgcaaccattgaaagacaacatccgcaaata |
6141678 |
T |
|
| Q |
316 |
ttgtagtct |
324 |
Q |
| |
|
|| |||||| |
|
|
| T |
6141679 |
ttttagtct |
6141687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 16 - 352
Target Start/End: Complemental strand, 13271489 - 13271153
Alignment:
| Q |
16 |
atcagtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcg |
115 |
Q |
| |
|
||||||||| ||||||||||||||||| | |||||| || ||||||||||||||||||| ||||||| | |||||| |||||||||||||||| | |
|
|
| T |
13271489 |
atcagtcagcatctcaagattgattaattcacttatctcctttggcatcttcttaatatgcgtgcctttcaaattaagatgacgtaaattgatgagtttg |
13271390 |
T |
|
| Q |
116 |
taaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatct |
215 |
Q |
| |
|
|||||| || ||||||||| | ||||||||| |||| || |||||||||| |||||| |||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
13271389 |
caaaaatttggcgggagctcaagtagtttaaaacattctttcagcaagagcgtatgcaaattatacaacatacaaatggaatcaggtaagcttgtaatct |
13271290 |
T |
|
| Q |
216 |
cagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaaccattgaaagataacatcctcaaata |
315 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
13271289 |
cggtgtaagaaaggtctagatagcgcagaagctttaagtttcttatctcatcagctagctctgagagattgcaacctttgaaagataacatccgtaaata |
13271190 |
T |
|
| Q |
316 |
ttgtagtcttgaatataaattatactgcacgttggtg |
352 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
13271189 |
ttgtagtcttgaatacaaattatactgcacattggtg |
13271153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 6167984 - 6168292
Alignment:
| Q |
16 |
atcagtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcg |
115 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| || ||||||||||||| ||||| ||||||| | |||||| |||||||||||||||| | |
|
|
| T |
6167984 |
atcagtcagcatctcaagattgattaatactcttatctcctttggcatcttcttgatatgtgtgcctttcaaattaagatgacgtaaattgatgagtttg |
6168083 |
T |
|
| Q |
116 |
taaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatct |
215 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||| |||| || ||||||||||| |||||| |||| ||| |||||||||||||||||||||||||| | |
|
|
| T |
6168084 |
ccaaaatttgatgggagctcagtcaatttaaaacattcttccagtaagagcgtatgcaaattatacagcatacaaatggaattaggtaagcttgtaatgt |
6168183 |
T |
|
| Q |
216 |
cagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaaccattgaaagataacatcctcaaata |
315 |
Q |
| |
|
| |||||||||||||||||||| || |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||| | | |||||| |
|
|
| T |
6168184 |
cggtgtaagaaaggtctagatatcgtagaagctttaaatttcttatctcatcagctagctctaagagattgcaaccattgaaagacaaccttcgcaaata |
6168283 |
T |
|
| Q |
316 |
ttgtagtct |
324 |
Q |
| |
|
|| |||||| |
|
|
| T |
6168284 |
ttttagtct |
6168292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 16 - 352
Target Start/End: Original strand, 6899181 - 6899517
Alignment:
| Q |
16 |
atcagtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcg |
115 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| |||| | ||||||||||| | ||||||||||||| || |||||| |||| ||||| ||||| | |
|
|
| T |
6899181 |
atcagtcagcatctcaagattgtttaaccctcctatcttcattggcatcttcattatatgagtgccttgcagattaagatgacgtagattgacgagtttg |
6899280 |
T |
|
| Q |
116 |
taaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatct |
215 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||| |||||| || | |||||| |||| ||| |||||||||| ||||||||||| ||||| |
|
|
| T |
6899281 |
caaaaatctgaagggagctcagtcagtttaaaacaaccttgcagtaagagtgtctgcaaattatacagcatacaaatggaatcaggtaagcttgcaatct |
6899380 |
T |
|
| Q |
216 |
cagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaaccattgaaagataacatcctcaaata |
315 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |||| || |||||| |
|
|
| T |
6899381 |
cggtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagctagctctatgagattgcaaccagagaaagacaacacccgcaaata |
6899480 |
T |
|
| Q |
316 |
ttgtagtcttgaatataaattatactgcacgttggtg |
352 |
Q |
| |
|
|| || ||||||| | ||||||| |||||| |||||| |
|
|
| T |
6899481 |
ttttactcttgaaaacaaattatgctgcacattggtg |
6899517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 16 - 337
Target Start/End: Original strand, 6916194 - 6916515
Alignment:
| Q |
16 |
atcagtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcg |
115 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||||||||||||| || |||||| |||||| |||| ||||| | |
|
|
| T |
6916194 |
atcagtcagcatctcaagattgtttaaccctcctatttttgttggcatcttcttaatatgagtgcctttcagattaagatggcgtaagttgacgagtttg |
6916293 |
T |
|
| Q |
116 |
taaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatct |
215 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| |||| ||||||||| || | ||||| || | ||| |||| |||| | |||||||||||||||| |
|
|
| T |
6916294 |
ccaaaatctaaagggagctcagtcaatttccaacattcttccaataagagtgtctgtaaattatatatcatacaaacggaaatcggtaagcttgtaatct |
6916393 |
T |
|
| Q |
216 |
cagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaaccattgaaagataacatcctcaaata |
315 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
6916394 |
cagtgtacgaaagatctagatagcgcagaagctttaaatttcttatctcatctgctagctccgagagactgcaaccatggaaagataacatccgcaaata |
6916493 |
T |
|
| Q |
316 |
ttgtagtcttgaatataaatta |
337 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
6916494 |
ttgtagtcttgaatacaaatta |
6916515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 6258295 - 6258607
Alignment:
| Q |
16 |
atcagtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcg |
115 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| | ||||||||||||||||||| ||||||| | |||||| | |||||||||||| | | |
|
|
| T |
6258295 |
atcagtcagcatctcaagattgattaattctcttatcttctttggcatcttcttaatatgcgtgcctttcaaattaagatgacataaattgatgagattg |
6258394 |
T |
|
| Q |
116 |
taaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatct |
215 |
Q |
| |
|
| ||||| ||| ||||||||||||| ||||||||| |||| || |||||| |||| |||||| |||||||| |||||||||| |||||| |||||||||| |
|
|
| T |
6258395 |
tgaaaatttgatgggagctcagtcagtttaaaacattcttccagtaagagtgtatgcaaattatacaacatacaaatggaatcaggtaaacttgtaatct |
6258494 |
T |
|
| Q |
216 |
cagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaaccattgaaagataacatcctcaaata |
315 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||||| || |||| |||||| |
|
|
| T |
6258495 |
cggtgtaagaaaggtctagatagcgcagaagctttaagtttcttatctcatcagctagctctaagagattgcaaccagagaaagacaatatccgcaaata |
6258594 |
T |
|
| Q |
316 |
ttgtagtcttgaa |
328 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
6258595 |
ttttagtcttgaa |
6258607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 20 - 325
Target Start/End: Original strand, 6264782 - 6265087
Alignment:
| Q |
20 |
gtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcgtaaa |
119 |
Q |
| |
|
||||| |||||||| || ||||||||||| ||| || ||||||||||||||||||| ||||||| | |||||| |||||||||| ||||| | ||| |
|
|
| T |
6264782 |
gtcagcatctcaaggtttattaaccctctcatctcctttggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgacgagtttgcaaa |
6264881 |
T |
|
| Q |
120 |
aatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatctcagt |
219 |
Q |
| |
|
||| ||| ||||||||||||||||||||||| |||| || |||||| |||| |||| | |||| | | ||||||||||||||||||||||||||||| || |
|
|
| T |
6264882 |
aatttgatgggagctcagtcaatttaaaacattcttccagtaagagggtatgcaaactatacagcttacaaatggaattaggtaagcttgtaatctctgt |
6264981 |
T |
|
| Q |
220 |
gtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaaccattgaaagataacatcctcaaatattgt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| ||||| | |||||||| | |
|
|
| T |
6264982 |
gtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagctagctctaagagattgcaacccgagaaagacaacattcgcaaatatttt |
6265081 |
T |
|
| Q |
320 |
agtctt |
325 |
Q |
| |
|
|||||| |
|
|
| T |
6265082 |
agtctt |
6265087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 57 - 352
Target Start/End: Complemental strand, 6722974 - 6722679
Alignment:
| Q |
57 |
ttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttg |
156 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||| |||||||||| ||||| ||| | ||||||||| |||| |||||||||||| || |||| |
|
|
| T |
6722974 |
ttggcatcttcttaatatgagtgcctttcagattaagataacgtaaattgacgagtttgtagatatctgaaggtagcttagtcaatttaaagcactcttc |
6722875 |
T |
|
| Q |
157 |
caataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaattt |
256 |
Q |
| |
|
||||||||| || | |||||| || | ||| ||||||||||||||||||||| ||| |||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
6722874 |
caataagagtgtctgcaaattatatagcatacaaatggaattaggtaagcttacaatgtcagtgtaggaaaggtctagatagcgcaaaagctttaaattc |
6722775 |
T |
|
| Q |
257 |
cttatctcatcagagagctccgagagattgcaaccattgaaagataacatcctcaaatattgtagtcttgaatataaattatactgcacgttggtg |
352 |
Q |
| |
|
||||||||||| || ||||| |||| ||||||||| |||||| | ||||| |||||||| |||||||||| | ||||||| |||||| |||||| |
|
|
| T |
6722774 |
cttatctcatcggatagctctaagaggttgcaaccagagaaagacagcatccgcaaatattttagtcttgaaaacaaattatgctgcacattggtg |
6722679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 6237846 - 6238092
Alignment:
| Q |
16 |
atcagtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcg |
115 |
Q |
| |
|
||||||||| ||||||||||||| ||| ||| |||| || ||||||||||||||||||| || |||| | |||||| ||||||||||| |||| | |
|
|
| T |
6237846 |
atcagtcagaatctcaagattgaataattctcgtatctcctttggcatcttcttaatatgcgttcctttcaaattaagatgacgtaaattgataagtttg |
6237945 |
T |
|
| Q |
116 |
taaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatct |
215 |
Q |
| |
|
|||||| ||| ||||||| ||||||||||||||| |||| | ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6237946 |
caaaaatttgatgggagcttagtcaatttaaaacattcttccggtaagagcgtatgcaaattatacaacatgcaaatggaattaggtaagcttgtaattt |
6238045 |
T |
|
| Q |
216 |
cagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatc |
262 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
6238046 |
cagtgtaagaaaggtctagatagcacaaaagctttaaatttcttatc |
6238092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 57 - 345
Target Start/End: Complemental strand, 6592248 - 6591960
Alignment:
| Q |
57 |
ttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttg |
156 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||| ||| ||||||||||||| || ||||||||||||||| || |||||||||||||| |||| |
|
|
| T |
6592248 |
ttggcatcttcttaatatgagtgcctttcagattaagatggcgcaaattgatgagtttgtgaaaatctgaagggagttcggtcaatttaaaacattcttc |
6592149 |
T |
|
| Q |
157 |
caataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaattt |
256 |
Q |
| |
|
|||||||| || | |||||| |||| | | |||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
6592148 |
caataagaatgtttgcaaattatacagcgtacaaatggaattaggtaagcttgcaatctcagttttagaaaggtctagatagcgcagaagctttaaattt |
6592049 |
T |
|
| Q |
257 |
cttatctcatcagagagctccgagagattgcaaccattgaaagataacatcctcaaatattgtagtcttgaatataaattatactgcac |
345 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| | || ||||||| |||||||| || ||||||| | ||||||| |||||| |
|
|
| T |
6592048 |
cttatctcatcatctagctttacgagattgcaaccagaaagggacaacatccgcaaatattttattcttgaaaacaaattatgctgcac |
6591960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 58 - 292
Target Start/End: Original strand, 7749137 - 7749371
Alignment:
| Q |
58 |
tggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgc |
157 |
Q |
| |
|
|||||||||||||||||||||||| | || |||||| |||||||||||||||| | ||||||||||||| ||||||| |||| | ||||| | || | |
|
|
| T |
7749137 |
tggcatcttcttaatatgagtgccgtttagattaagatgacgtaaattgatgagtttgcaaaaatctgaaggcagctcagccaatctgaaacattgttcc |
7749236 |
T |
|
| Q |
158 |
aataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttc |
257 |
Q |
| |
|
|| ||||| || | |||||| |||| ||| ||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7749237 |
aacaagagtgtctgcaaattatacagcatacaaatggaattgggtaagcttgcaatctcagtgtgagaaaggtctagatagcgcagaagctttaaatttc |
7749336 |
T |
|
| Q |
258 |
ttatctcatcagagagctccgagagattgcaacca |
292 |
Q |
| |
|
|||||||||| | ||||| ||||||||||||| |
|
|
| T |
7749337 |
ttatctcatcggctagctctacgagattgcaacca |
7749371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 6881609 - 6881861
Alignment:
| Q |
16 |
atcagtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcg |
115 |
Q |
| |
|
||||||||| |||||||||||| |||||| | |||| |||||||||||||||||||||||||| || |||||| |||||| ||||||| | | |
|
|
| T |
6881609 |
atcagtcagcatctcaagattgtttaaccgttctatctttgttggcatcttcttaatatgagtgcctgtcagattaagatgacgtaaactgatgagcttg |
6881708 |
T |
|
| Q |
116 |
taaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatct |
215 |
Q |
| |
|
||||||||| || || ||| |||||| ||||| |||| ||||||||| || | ||||| |||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
6881709 |
caaaaatctgttggaagttcaagcaatttgaaacattcttccaataagagtgtctgtaaattatacaacatacaaatggaattaggtaagcttgcaatct |
6881808 |
T |
|
| Q |
216 |
cagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatca |
268 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6881809 |
cagtgtgcgaaaggtccagatagcgcagaagctttaaatttcttatcccatca |
6881861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 57 - 249
Target Start/End: Original strand, 5262911 - 5263100
Alignment:
| Q |
57 |
ttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttg |
156 |
Q |
| |
|
||||||||||| ||| |||||| ||| || |||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||| | | || | |
|
|
| T |
5262911 |
ttggcatcttcgagataagagtgctttctagattaagatggcgtaaattgacgagtttataaaaatctgaagggagctccgtcaatttacatc---ctag |
5263007 |
T |
|
| Q |
157 |
caataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctt |
249 |
Q |
| |
|
||||||||| || | |||||| ||||||| ||||||||| ||||| |||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
5263008 |
caataagagtgtctgcaaattatacaacacataaatggaatcaggtaggcttgtaatcccagtgtaagaaaggtctagataacgcagaagctt |
5263100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 98 - 285
Target Start/End: Original strand, 5279828 - 5280012
Alignment:
| Q |
98 |
cgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaat |
197 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||||||||||||||| || | | || |||||||||| || | |||||| ||||||| |||||||||| |
|
|
| T |
5279828 |
cgtaaattgacaagtttgtaaaaatttgaagggagctcagtcaatctacatc---ctagcaataagagtgtctgcaaattatacaacacacaaatggaat |
5279924 |
T |
|
| Q |
198 |
taggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagatt |
285 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||| | |||||||||||| || |||||||| |||| ||||| |||||||| |
|
|
| T |
5279925 |
caggtaggcttgtaattccagtgtaagaaaggtctagataacacagaagctttaagttgcttatctcgtcagctagctcggagagatt |
5280012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 98 - 268
Target Start/End: Complemental strand, 6480846 - 6480679
Alignment:
| Q |
98 |
cgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaat |
197 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||||||||||| | | | ||||||| |||| || | |||||| |||||||| |||||| || |
|
|
| T |
6480846 |
cgtaaattgatgagtttggaaaaatttgaagggagctcagtcaattcacacc---cttgcaacaagattgtttgcaaattatacaacatacaaatgctat |
6480750 |
T |
|
| Q |
198 |
taggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatca |
268 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||| ||| |||| ||| |||||||||||| |
|
|
| T |
6480749 |
caggtaagcttgtaatctcagtgaaagaaaggtcaagatagcgcaaaagttttatattgcttatctcatca |
6480679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 100 - 267
Target Start/End: Original strand, 6735127 - 6735294
Alignment:
| Q |
100 |
taaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaatta |
199 |
Q |
| |
|
|||||||| ||||| | |||||| |||||||||||||||||||| | |||| ||| || ||||| || | ||||| |||||||| ||||||| || | |
|
|
| T |
6735127 |
taaattgacgagtttggaaaaatttgaagggagctcagtcaattgacgacaaccttttaacaagagtgtttgtaaattatacaacatacaaatggtatca |
6735226 |
T |
|
| Q |
200 |
ggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatc |
267 |
Q |
| |
|
||||||||| |||||| |||||| |||||||||||||| |||| ||| |||||||| ||||||||||| |
|
|
| T |
6735227 |
ggtaagcttctaatcttagtgtatgaaaggtctagataacgcaaaagttttaaattgcttatctcatc |
6735294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 98 - 328
Target Start/End: Complemental strand, 6555332 - 6555102
Alignment:
| Q |
98 |
cgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaat |
197 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||||||||||| | |||| |||| || ||||| || | |||||| |||||||| ||||||| || |
|
|
| T |
6555332 |
cgtaaattgatgagtttggaaaaatttgaagggagctcagtcaattgataacagtcttttaacaagagtgtttgcaaattatacaacatacaaatggtat |
6555233 |
T |
|
| Q |
198 |
taggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaaccattgaa |
297 |
Q |
| |
|
|||||||||| |||| ||||||| | |||||||||||| |||| ||| |||| |||| ||||||||| ||||| ||||||| |||||| | || |
|
|
| T |
6555232 |
caggtaagcttttaataccagtgtatgtaaggtctagataacgcaaaagttttagctttcctatctcatccacaagctctgagagatgccaaccactaaa |
6555133 |
T |
|
| Q |
298 |
agataacatcctcaaatattgtagtcttgaa |
328 |
Q |
| |
|
| || ||||| |||| ||| |||||||||| |
|
|
| T |
6555132 |
tgttagcatccgcaaaaattttagtcttgaa |
6555102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 98 - 328
Target Start/End: Complemental strand, 6521026 - 6520796
Alignment:
| Q |
98 |
cgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaat |
197 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||||||||||| | || ||| || ||||| || | ||||| |||| ||| ||||||| || |
|
|
| T |
6521026 |
cgtaaattgatgagtttggaaaaatttgaagggagctcagtcaattgatggcagccttttaacaagagtgtttgtaaattatacagcatacaaatggtat |
6520927 |
T |
|
| Q |
198 |
taggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaaccattgaa |
297 |
Q |
| |
|
||||||||||| ||||| | ||||||||||||||||||| |||| ||| |||||||| ||||||||||| ||||| |||||| ||||||| | || |
|
|
| T |
6520926 |
caggtaagcttgcaatcttattgtaagaaaggtctagataacgcaaaagttttaaattgcttatctcatccacaagctctgagagaaggcaaccactaaa |
6520827 |
T |
|
| Q |
298 |
agataacatcctcaaatattgtagtcttgaa |
328 |
Q |
| |
|
| || ||||| |||| ||| |||||||||| |
|
|
| T |
6520826 |
tgttagcatccgcaaacattttagtcttgaa |
6520796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 98 - 268
Target Start/End: Original strand, 6946440 - 6946610
Alignment:
| Q |
98 |
cgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaat |
197 |
Q |
| |
|
|||||||||| ||||| | |||| |||||||||||| ||||| || ||| ||||||||||||| || | |||||| |||||||| ||||| |||| |
|
|
| T |
6946440 |
cgtaaattgacgagttttgagaaatttgaagggagctctgtcaacttcctacagccttgcaataagagtgtttgcaaattatacaacatacaaatagaat |
6946539 |
T |
|
| Q |
198 |
taggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatca |
268 |
Q |
| |
|
||||| |||||||| | ||||| ||||||||||||||| |||| |||||||||||| |||||||||||| |
|
|
| T |
6946540 |
cgggtaaccttgtaatattagtgtgagaaaggtctagataacgcaaaagctttaaattgcttatctcatca |
6946610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 6850245 - 6850304
Alignment:
| Q |
195 |
aattaggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaat |
254 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6850245 |
aattaggtatgcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaat |
6850304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 276
Target Start/End: Complemental strand, 8569865 - 8569646
Alignment:
| Q |
57 |
ttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttg |
156 |
Q |
| |
|
|||||||||||||||||| |||||||| || |||||| |||||||||| |||| |||||||| ||||||||||| ||||||| | |||| |||| |
|
|
| T |
8569865 |
ttggcatcttcttaatatcagtgccttttagattaagatggcgtaaattggcaagtttgtaaaaatatgaagggagcttggtcaattcagaacattcttc |
8569766 |
T |
|
| Q |
157 |
caataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaattt |
256 |
Q |
| |
|
||||| || || | ||||| |||||| | |||||||||| ||| || ||| ||||||| ||| || || ||||||||||||| |||||||||||| |
|
|
| T |
8569765 |
caatattagtgtttgtaaattatacaacttacaaatggaatcaggcaaccttttaatctctgtgcgagtcagatctagatagcgcaaaagctttaaattg |
8569666 |
T |
|
| Q |
257 |
cttatctcatcagagagctc |
276 |
Q |
| |
|
| ||||||||| || ||||| |
|
|
| T |
8569665 |
catatctcatctgacagctc |
8569646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 173 - 266
Target Start/End: Original strand, 8588978 - 8589071
Alignment:
| Q |
173 |
aaattgtacaacatgcaaatggaattaggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcat |
266 |
Q |
| |
|
||||| |||||||| ||||||| || |||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||| |||||||||| |
|
|
| T |
8588978 |
aaattatacaacatacaaatggtatcaggtaagcttgtaatcaaagtgtaagaaaggtctagataacgcaaaagttttaaattgcttatctcat |
8589071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 268
Target Start/End: Original strand, 8453822 - 8453992
Alignment:
| Q |
98 |
cgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaat |
197 |
Q |
| |
|
|||||||||| ||||| | |||||| |||||||||||| ||||||| | |||| ||| || ||||| || | |||||| | |||||| ||||||| || |
|
|
| T |
8453822 |
cgtaaattgacgagtttggaaaaatttgaagggagctctgtcaattcacaacagccttccagcaagagtgtttgcaaattatgcaacatacaaatggtat |
8453921 |
T |
|
| Q |
198 |
taggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatca |
268 |
Q |
| |
|
|||||| || |||| |||||||| ||||||||||| |||| ||| |||||||| |||||||||||| |
|
|
| T |
8453922 |
caggtaatatttcaatccatgtgtaagagaggtctagataacgcaaaagttttaaattgcttatctcatca |
8453992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 6850239 - 6850199
Alignment:
| Q |
214 |
ctcagtgtaagaaaggtctagatagcgcagaagctttaaat |
254 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6850239 |
ctcagtgtaagaaaggtctagataccgcagaagctttaaat |
6850199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 267
Target Start/End: Original strand, 5297859 - 5298065
Alignment:
| Q |
58 |
tggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgc |
157 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| ||||| ||||||| ||| ||||| |||||||||| |||| | |||||||| | ||||| | |
|
|
| T |
5297859 |
tggcatcttctttatatgagtgccttttaggataagatggcgtaaactgacgagtttgtaaaaatctaaaggaaactcagtcagt---ggacaatgaatc |
5297955 |
T |
|
| Q |
158 |
aataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttc |
257 |
Q |
| |
|
|||| | || |||||||| |||||| |||| ||||||| |||||||||||| | | | || |||||| || ||||| |||||||||||||| || | |
|
|
| T |
5297956 |
aatatcaatgtttccaaattatacaacgtgcagatggaatcaggtaagcttgttagcccggttcgagaaagatcaagataacgcagaagctttaagttgc |
5298055 |
T |
|
| Q |
258 |
ttatctcatc |
267 |
Q |
| |
|
|||||||||| |
|
|
| T |
5298056 |
ttatctcatc |
5298065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 6839815 - 6839729
Alignment:
| Q |
57 |
ttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatt |
143 |
Q |
| |
|
||||||||||||| |||| | ||||||||| |||||| ||||||| ||| |||| |||||||| ||||||||| |||||||||| |
|
|
| T |
6839815 |
ttggcatcttctttatattacagccttcaagattaagatggcgtaaactgactagtttgtaaaaatttgaagggagttcagtcaatt |
6839729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 268
Target Start/End: Original strand, 5267183 - 5267391
Alignment:
| Q |
57 |
ttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttg |
156 |
Q |
| |
|
||||||||||||| |||||||||| ||| || | |||| ||||| || | |||| ||||||||||||||||||||| |||||| |||||| | |
|
|
| T |
5267183 |
ttggcatcttctttatatgagtgcattccagatcaagatgacgtaagtttgtaagtttgtaaaaatctgaagggagctcggtcaatg---aacaatatgc |
5267279 |
T |
|
| Q |
157 |
caataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaattt |
256 |
Q |
| |
|
||||| || || | ||||| |||| | |||||||||| ||| || ||| |||||| ||| ||| ||||||||||| |||| |||||||||||| |
|
|
| T |
5267280 |
caatagtagtgtctgtaaattatacaggttacaaatggaatcaggcaaccttttaatctttgtgagagacaggtctagataacgcaaaagctttaaattg |
5267379 |
T |
|
| Q |
257 |
cttatctcatca |
268 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5267380 |
cttatctcatca |
5267391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 6527766 - 6527721
Alignment:
| Q |
98 |
cgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatt |
143 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||||||||||| |
|
|
| T |
6527766 |
cgtaaattgatgagtttggaaaaatttgaagggagctcagtcaatt |
6527721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 5249338 - 5249381
Alignment:
| Q |
99 |
gtaaattgatgagttcgtaaaaatctgaagggagctcagtcaat |
142 |
Q |
| |
|
|||||||| | |||| |||||||||||||||||||||||||||| |
|
|
| T |
5249338 |
gtaaattgctaagtttgtaaaaatctgaagggagctcagtcaat |
5249381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 5249454 - 5249504
Alignment:
| Q |
218 |
gtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatca |
268 |
Q |
| |
|
|||||||| ||||||||||| |||| |||||||||||| |||| ||||||| |
|
|
| T |
5249454 |
gtgtaagataggtctagataacgcaaaagctttaaattgcttacctcatca |
5249504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 4389842 - 4389761
Alignment:
| Q |
57 |
ttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcgtaaaaatctgaagggagctcagt |
138 |
Q |
| |
|
||||||||||||| ||| |||||||||| || | |||| ||||| || | |||| |||||||||||||||||||||||| |
|
|
| T |
4389842 |
ttggcatcttctttataagagtgccttccagatcaagatgacgtaagtttgtaagtttgtaaaaatctgaagggagctcagt |
4389761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 268
Target Start/End: Complemental strand, 4389714 - 4389634
Alignment:
| Q |
188 |
caaatggaattaggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatca |
268 |
Q |
| |
|
|||||||||| ||| || ||| |||||| ||| ||| ||||||||||| |||| |||||||||||| ||||||| |||| |
|
|
| T |
4389714 |
caaatggaatcaggcaaccttttaatctttgtgagagataggtctagataacgcataagctttaaattgcttatcttatca |
4389634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 6449529 - 6449485
Alignment:
| Q |
223 |
agaaaggtctagatagcgcagaagctttaaatttcttatctcatc |
267 |
Q |
| |
|
||||||||||||||| || | |||||||||||| ||||||||||| |
|
|
| T |
6449529 |
agaaaggtctagataacgtaaaagctttaaattgcttatctcatc |
6449485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 16 - 328
Target Start/End: Complemental strand, 35141305 - 35140995
Alignment:
| Q |
16 |
atcagtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcg |
115 |
Q |
| |
|
||||||| | ||||||||||||||||||||||| ||| || ||||||| ||||||||||| ||||||| | |||||| | |||||||||||||| | |
|
|
| T |
35141305 |
atcagtcggcatctcaagattgattaaccctctcatctcctttggcat-ttcttaatatgtgtgcctttcaaattaagatgacataaattgatgagtttg |
35141207 |
T |
|
| Q |
116 |
taaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatct |
215 |
Q |
| |
|
||||| ||| ||||||||| || ||||||||| |||| || ||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35141206 |
cgaaaatttgatgggagctcaatcggtttaaaacattcttccagtaagagcgtatgcaaattatacaacatacaaatggaattaggtaagcttgtaatct |
35141107 |
T |
|
| Q |
216 |
cagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaaccattgaaagataacatcctcaaata |
315 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||| |||| |||||| |||| ||||| ||||||||||||| | |||||| ||||||| |||||| |
|
|
| T |
35141106 |
cggtgtaagaaaggtctagatagcgcataagctttaagtttcctatctcttcagctagctctgagagattgcaacaagagaaagacaacatccgcaaata |
35141007 |
T |
|
| Q |
316 |
ttgtagtcttgaa |
328 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
35141006 |
tt-tagtcttgaa |
35140995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 98 - 267
Target Start/End: Complemental strand, 8371 - 8202
Alignment:
| Q |
98 |
cgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaat |
197 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||||||||||| | |||| ||| || ||||| || | ||||| |||||||| ||||||| || |
|
|
| T |
8371 |
cgtaaattgatgagtttggaaaaatttgaagggagctcagtcaattgacgacaaccttttaacaagagtgtttgtaaattatacaacatacaaatggtat |
8272 |
T |
|
| Q |
198 |
taggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatc |
267 |
Q |
| |
|
|||||||||| |||||| |||||| |||||||||||||| |||| ||| |||||||| ||||||||||| |
|
|
| T |
8271 |
caggtaagcttctaatcttagtgtatgaaaggtctagataacgcaaaagttttaaattgcttatctcatc |
8202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 13353 - 13412
Alignment:
| Q |
195 |
aattaggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaat |
254 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13353 |
aattaggtatgcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaat |
13412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 13344 - 13307
Alignment:
| Q |
217 |
agtgtaagaaaggtctagatagcgcagaagctttaaat |
254 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13344 |
agtgtaagaaaggtctagataccgcagaagctttaaat |
13307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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