View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_107 (Length: 367)
Name: NF20384_high_107
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_107 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 138 - 311
Target Start/End: Original strand, 2494650 - 2494823
Alignment:
| Q |
138 |
gagtggtggctcttctggttcacggcggtggaagttacggtggcagccacaagcagcacattttaaggatgttgggtcggttggtgttgctgttggtgat |
237 |
Q |
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| T |
2494650 |
gagtggtggctcttctggttcacggcggtggaagttacggtggcagccacaagcagcacattttaaggatgttgggtcggttggtgttgctgttggtgat |
2494749 |
T |
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| Q |
238 |
gtcatgaattcaccacatccatctagggcatgaccacctaggtttgctgcatggtttttgagacattctttgta |
311 |
Q |
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| T |
2494750 |
gtcatgaattcaccacagccatctagggcatgaccacctaggtttgctgcatggtttttgagacattctttgta |
2494823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 2494532 - 2494587
Alignment:
| Q |
17 |
agtaggaagatgagatcggtggtggtgaagaggaatttgggctccggtgagagaac |
72 |
Q |
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| T |
2494532 |
agtaggaagatgagatcggtggtggtgaagaggaatttgggctccggtgagagaac |
2494587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 148 - 311
Target Start/End: Original strand, 3683923 - 3684086
Alignment:
| Q |
148 |
tcttctggttcacggcggtggaagttacggtggcagccacaagcagcacattttaaggatgttgggtcggttggtgttgctgttggtgatgtcatgaatt |
247 |
Q |
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| T |
3683923 |
tcttccggttcacggcggtggaaattccggtgacaaccacatgcggcacattttatggaggcagggtcatcggaggtggcggttggtgatggcatgaatt |
3684022 |
T |
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| Q |
248 |
caccacatccatctagggcatgaccacctaggtttgctgcatggtttttgagacattctttgta |
311 |
Q |
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| T |
3684023 |
cacaacaaccgtctagggcatgaccacctagggttgccacgtggtttttgagacattctttgta |
3684086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 146 - 311
Target Start/End: Complemental strand, 24181229 - 24181064
Alignment:
| Q |
146 |
gctcttctggttcacggcggtggaagttacggtggcagccacaagcagcacattttaaggatgttgggtcggttggtgttgct-gttggtgatgtcatga |
244 |
Q |
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| T |
24181229 |
gctcttgtggctcacggcggtggaaattccggtgacagccacaagcagcacatttgagggatctagggtca-ttgggattgagagatgatggtggcatga |
24181131 |
T |
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| Q |
245 |
attcaccacatccatctagggcatgaccacctaggtttgctgcatggtttttgagacattctttgta |
311 |
Q |
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| T |
24181130 |
attcaccacatccatcaagtgcatgtccacctagggatgcagcatgatttttgagacattctttgta |
24181064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 14021837 - 14021876
Alignment:
| Q |
163 |
cggtggaagttacggtggcagccacaagcagcacatttta |
202 |
Q |
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| T |
14021837 |
cggtggaagttacggtggcagttacaagcagcacatttta |
14021876 |
T |
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