View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_109 (Length: 364)
Name: NF20384_high_109
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_109 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 52716289 - 52715921
Alignment:
| Q |
1 |
tgatctggtgtgaagattttccaccaacgaactgaaccgtatgctaatatcatagcaacatatagcggcacaattgctgcgaaaacatcgtatatatcct |
100 |
Q |
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| T |
52716289 |
tgatctggtgtgaagattttccaccaacgaactgaaccgtatgctaatatcatagcaacatatagcggcacaattgctgcgaaaacatcgtatatatcct |
52716190 |
T |
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| Q |
101 |
taccggtaatcatggttatagataggtcaagatagattagatt-----------gaaattgttatagctagggtgacnnnnnnnnn-gagagtttgtgta |
188 |
Q |
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| T |
52716189 |
taccggtaatcatggttatagataggtcaaggtagattagattagacacacaaagaaattgttatagctagggtgacaaaaaaaagagagagtttgtgta |
52716090 |
T |
|
| Q |
189 |
taaattt-atttaagaaggaaacatggctgagaa---aggtttgattctgtattgttaagtcttctcttatagagggtgacacct--atgtttataatta |
282 |
Q |
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| T |
52716089 |
taaattttatttaagaaggaaacatggctgagaagaaaggtttaattctgtattgttaagtcttctcttatagagggtgacacctctatgtttataatta |
52715990 |
T |
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| Q |
283 |
aatgagatttataaagtttataataaaaaatggaagttcaaatgtagacagaagagggttggatattct |
351 |
Q |
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| T |
52715989 |
aatgagatttataaagtttataataaaaaatggaagttcaaatgtagacagaagagggttggattttct |
52715921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 52710981 - 52710841
Alignment:
| Q |
1 |
tgatctggtgtgaagattttccaccaacgaactgaaccgtatgctaatatcatagcaacatatagcggcacaattgctgcgaaaacatcgtatatatcct |
100 |
Q |
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|||||||||||||||||||||||||| || || ||||| ||||||||||||||||| |||||||| |||||||| || || ||||||| |||||| |||| |
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| T |
52710981 |
tgatctggtgtgaagattttccaccatcggaccgaaccatatgctaatatcatagcgacatatagtggcacaatcgccgctaaaacattgtatatgtcct |
52710882 |
T |
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| Q |
101 |
taccggtaatcatggttatagataggtcaagatagattaga |
141 |
Q |
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| T |
52710881 |
tgccggtaatcatggttatagatatgtcaaggtaggttaga |
52710841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 10839076 - 10839139
Alignment:
| Q |
1 |
tgatctggtgtgaagattttccaccaacgaactgaaccgtatgctaatatcatagcaacatata |
64 |
Q |
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||||| |||| ||| || ||||||||||| || |||||||| ||||| |||||||||||||||| |
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| T |
10839076 |
tgatccggtgagaaaatcttccaccaacggaccgaaccgtaggctaagatcatagcaacatata |
10839139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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