View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_11 (Length: 662)
Name: NF20384_high_11
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 18 - 657
Target Start/End: Original strand, 1831625 - 1832264
Alignment:
| Q |
18 |
agaaatcatccactttgggcaactgccactgaagaagacattgattgtgccatggaggtacgtttacgcctaattacatatatgccactgtgtctgtaga |
117 |
Q |
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| T |
1831625 |
agaaatcatccactttgggcaactgccactgaagaagacattgattgtgccatggaggtacgtttacgcctaattacatatatgccactgtgtctgtaga |
1831724 |
T |
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| Q |
118 |
ttctgaatacaattgtttgatttcatattagctttatacttcatattttcaaccaaagcagagagataaatagcctcgcttgcagggtttggaaaaatat |
217 |
Q |
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| T |
1831725 |
ttctgaatacaattgtttgatttcatattagctttatacttcatattttcaaccaaagcagagagataaatagcctcgcttgcagggtttggaaaaatat |
1831824 |
T |
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| Q |
218 |
ataatgactaaattgttctctcggacatttgctgcttctcctgaggatgcaaagattgaccatgaaatctctgagaaaataagcttgctgcaaacatttt |
317 |
Q |
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| T |
1831825 |
ataatgactaaattgttctctcgaacatttgctgcttctcctgaggatgcaaagattgaccatgaaatctctgagaaaataagcttgctgcaaacatttt |
1831924 |
T |
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| Q |
318 |
tgaagcctgaacatttggatataccaccagttcttcataatgaagcatcatggctggtatggtatgcttcatgatcatgatgcatgattcaattttaact |
417 |
Q |
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| T |
1831925 |
tgaagcctgaacatttggatataccaccagttcttcataatgaagcatcatggctggtatggtatgcttcatgatcatgatgcatgattcaattttaact |
1832024 |
T |
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| Q |
418 |
tattatatgatttttattgcaattgttttattctaatcagcgataacattagttagggtttgattcctagacataatataaccatattcttgaatgtgtc |
517 |
Q |
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| T |
1832025 |
tattatatgatttttattgcaattgttttattctaatcagcgataacattagttagggtttgattcctagacataatataaccatattcttgaatgtgtc |
1832124 |
T |
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| Q |
518 |
aaacattgtcactatggtctttaaatctgtcaaatttacaaaaatattcatgaatatatctttctttagtgagtttgatccttgaatatctttcattagt |
617 |
Q |
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| T |
1832125 |
aaacattgtcactgtggtctttaaatctgtcaaatttacaaaaatattcatgaatatatctttctttagtgagtttgatccttaaaaatctttcattagt |
1832224 |
T |
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| Q |
618 |
cagtttaaccgtcgaatgttcatttcccttttcatctcac |
657 |
Q |
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| T |
1832225 |
cagtttaaccgtcgaatattcatttcccttttcatttcac |
1832264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 599
Target Start/End: Complemental strand, 7713754 - 7713662
Alignment:
| Q |
507 |
ttgaatgtgtcaaacattgtcactatggtctttaaatctgtcaaatttacaaaaatattcatgaatatatctttctttagtgagtttgatcct |
599 |
Q |
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||||||||||||| |||||||||||| || || | | | ||||| || ||||||||||| ||||| |||||||||||| ||||||| |||| |
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| T |
7713754 |
ttgaatgtgtcaagcattgtcactataatccttgattgtatcaaaattgcaaaaatattcttgaatgtatctttctttaccgagtttggtcct |
7713662 |
T |
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