View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_high_113 (Length: 362)
Name: NF20384_high_113
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_113 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 22883958 - 22884312
Alignment:
| Q |
1 |
aacagacaattgtttcct-gttcatttcataaggatacttgaataattctaaattttaactgcataaataggtactcaatatggttaaagtagatcttaa |
99 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22883958 |
aacagacaattgtttcctagttcatttcataaggatacttgaataattataaattttaactgcataaataggtactcaatatggttaaagtagatcttaa |
22884057 |
T |
|
| Q |
100 |
cgagcataatgaagctgcccttggtaaaggagttgttttgatgatgtttgattaaaactaggtattaagtgtgtt-gatgatgtttattgtttacatgtt |
198 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22884058 |
cgagcataatgaagctgcctctggtaatggagttgttttgatgatgattgattaaaactaggtattaagtgtgtttgatgatgtttattgtttacatgtt |
22884157 |
T |
|
| Q |
199 |
catagtaattactaacgatgtttacatgtgcatagtaattagtatatattaaagcacctagccgtccatgatcttaagtttcttccaagtgtctcgtctg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22884158 |
catagtaattactaacgatgtttacatgtgcatagtaattagtatatattaaagcacctagccatccatgatcttaagtttcttcaaagtgtctcgtctg |
22884257 |
T |
|
| Q |
299 |
tcaagtttcattttgtgtttcattttgtgg-aaaactcatttctccgtacctttg |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
22884258 |
tcaagtttcattttgtgtttcattttgtggcaaaactcatttcttcgtacctttg |
22884312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 22916687 - 22917040
Alignment:
| Q |
1 |
aacagacaattgtttcct-gttcatttcataaggatacttgaataattctaaattttaactgcataaataggtactcaatatggttaaagtagatcttaa |
99 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22916687 |
aacagacaattgtgtcctagttcatttcataaggatacttgagtaattctaaattttaactgcataaataggtactcaatatggttaaagtagatcttaa |
22916786 |
T |
|
| Q |
100 |
cgagcataatgaagctgcccttggtaaaggagttgttttgatgatgtttgattaaaactaggtattaagtgtgttgatgatgtttattgtttacatgttc |
199 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22916787 |
cgagcataatgaagctgcccttggtaatggagttgttttgatgatgtttgattaaaactaggtattaagtgtgttgatgatgtttattgtttacatgttc |
22916886 |
T |
|
| Q |
200 |
atagtaattactaacgatgtttacatgtgcatagtaattagtatatattaaagcacctagccgtccatgatcttaagtttcttccaagtgtctcgtctgt |
299 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||| || ||| |
|
|
| T |
22916887 |
atagtaattactaacgatctttacatgtgcatagtaattagtatatattaaagcatctagccatccatgatcttaagtttcttcaaagtgtcttgtgtgt |
22916986 |
T |
|
| Q |
300 |
caagtttcattttgtgtttcattttgtgg-aaaactcatttctccgtacctttg |
352 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||| | ||||||| |
|
|
| T |
22916987 |
caagtttcattttgtgtttcagtttgtggcaaaactcatttctctgaacctttg |
22917040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 22901856 - 22902172
Alignment:
| Q |
1 |
aacagacaattgtttcct-gttcatttcataaggatacttgaataattctaaattttaactgcataaataggtactcaatatggttaaagtagatcttaa |
99 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22901856 |
aacagacaattgtttcctagttcatttcataaggatacttgaataattctaaattttaactgcataaataggtactcaatatggttaaagtagatcttaa |
22901955 |
T |
|
| Q |
100 |
cgagcataatgaagctgcccttggtaaaggagttgttttgatgatgtttgattaaaactaggtattaagtgtg-ttgatgatgtttattgtttacatgtt |
198 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
22901956 |
cgagcataatgaagctgcccttggtaatggagttgttttgatgatgtttgattaaaactaggtattaagtgtgtttgatgatgtttattgtttacatgtt |
22902055 |
T |
|
| Q |
199 |
catagtaattactaacgatgtttacatgtgcatagtaattagtatatattaaagcacctagccgtccatgatcttaagtttcttccaagtgtctcgtctg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22902056 |
catagtaattactaacgatgtttacatgtgcatagtaattagtatatattaaagcacctagccatccatgatcttaagtttcttcaaagtgtctcgtctg |
22902155 |
T |
|
| Q |
299 |
tcaagtttcattttgtg |
315 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
22902156 |
tcaagtttcattttgtg |
22902172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 22982799 - 22982727
Alignment:
| Q |
27 |
cataaggatacttgaataattctaaattttaactgcataaataggtactcaatatggttaaagtagatcttaa |
99 |
Q |
| |
|
|||||||||| || |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22982799 |
cataaggataactggataattctaaatttcaattgcataaataggtactcaatatggtttaagtagatcttaa |
22982727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 23805609 - 23805681
Alignment:
| Q |
27 |
cataaggatacttgaataattctaaattttaactgcataaataggtactcaatatggttaaagtagatcttaa |
99 |
Q |
| |
|
|||||||||| || |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23805609 |
cataaggataactggataattctaaatttcaattgcataaataggtactcaatatggtttaagtagatcttaa |
23805681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 128 - 324
Target Start/End: Complemental strand, 30989978 - 30989775
Alignment:
| Q |
128 |
ggagttgttttgatgatgtttgattaaaactaggtattaagtgtgttgatgatgtttattgtttacatgttcatagtaattactaacga-------tgtt |
220 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||| || |||| |
|
|
| T |
30989978 |
ggagttgttttgatcatgtttgattaagactaggtattaagtgtgttgatgatgtttattatttacatgtttatagtaattagtaatgatgtttattgtt |
30989879 |
T |
|
| Q |
221 |
tacatgtgcatagtaattagtatatattaaagcacctagccgtccatgatcttaagtttcttccaagtgtctcgtctgtcaagtttcattttgtgtttca |
320 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||| ||| |||| || ||||| ||||||||||| ||||| |
|
|
| T |
30989878 |
tacatgttcatagtaattagtatatgttaaaccacctagccatccatgatcttaattttcttcaaagcgtcttgtgcgtcaaatttcattttgtatttca |
30989779 |
T |
|
| Q |
321 |
tttt |
324 |
Q |
| |
|
|||| |
|
|
| T |
30989778 |
tttt |
30989775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 129 - 323
Target Start/End: Complemental strand, 30986760 - 30986557
Alignment:
| Q |
129 |
gagttgttttgatgatgtttgattaaaactaggtattaagtgtgttgatgatgtttattgtttacatgttcatagtaattact--aacgatgttta---- |
222 |
Q |
| |
|
|||||||||||||||||||||||||| | | | ||||||||||||||| ||| ||||||||||||| ||||||||||||| | || |||||||| |
|
|
| T |
30986760 |
gagttgttttgatgatgtttgattaagattggatattaagtgtgttgaagattattattgtttacatattcatagtaattagtgtaatgatgtttattgt |
30986661 |
T |
|
| Q |
223 |
---catgtgcatagtaattagtatatattaaagcacctagccgtccatgatcttaagtttcttccaagtgtctcgtctgtcaagtttcattttgtgtttc |
319 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||||||||| ||| | ||||||||| ||||| ||||||| || |||||||| |||||||||||||| |
|
|
| T |
30986660 |
ttacatgttcatagtaattaatatatgttaaagcacctagccatccttaatcttaagtctcttcaaagtgtcctgtgtgtcaagtatcattttgtgtttc |
30986561 |
T |
|
| Q |
320 |
attt |
323 |
Q |
| |
|
|||| |
|
|
| T |
30986560 |
attt |
30986557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 263 - 328
Target Start/End: Complemental strand, 14459995 - 14459930
Alignment:
| Q |
263 |
tccatgatcttaagtttcttccaagtgtctcgtctgtcaagtttcattttgtgtttcattttgtgg |
328 |
Q |
| |
|
||||||||||||| ||||||| |||||||| || ||||||||| |||||||||||||||||||||| |
|
|
| T |
14459995 |
tccatgatcttaaatttcttcaaagtgtcttgtatgtcaagttacattttgtgtttcattttgtgg |
14459930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 8988354 - 8988444
Alignment:
| Q |
115 |
tgcccttggtaaaggagttgttttgatgatgtttgattaaaactaggtattaagtgtgttgatgatgtttattgtttacatgttcatagtaa |
206 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
8988354 |
tgcccttggtgtaagagttgttttgatgatgtttgattata-ctatgtattaagtgtgttgatgatatttattgtttacatgttcaaagtaa |
8988444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 312
Target Start/End: Original strand, 8992717 - 8992810
Alignment:
| Q |
219 |
tttacatgtgcatagtaattagtatatattaaagcacctagccgtccatgatcttaagtttcttccaagtgtctcgtctgtcaagtttcatttt |
312 |
Q |
| |
|
|||||| || ||||||||||||||||| |||||||| ||| ||||||||||||||||||||| |||||| | | |||||||| ||||||| |
|
|
| T |
8992717 |
tttacaagttcatagtaattagtatatgttaaagcagctaattatccatgatcttaagtttcttctaagtgttttatgtgtcaagtctcatttt |
8992810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 8988425 - 8988512
Alignment:
| Q |
217 |
tgtttacatgtgcatagtaattagtatatattaaagcacctagccgtccatgatcttaagtttcttccaagtgtctcgtctgtcaagtt |
305 |
Q |
| |
|
||||||||||| || ||||| || |||| ||||| ||||||||| |||||||| |||||||||||| |||||||| || ||| ||||| |
|
|
| T |
8988425 |
tgtttacatgttcaaagtaaatac-atatgttaaatcacctagccatccatgatattaagtttcttcaaagtgtcttgtgtgttaagtt |
8988512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 8992697 - 8992737
Alignment:
| Q |
169 |
tgtgttgatgatgtttattgtttacatgttcatagtaatta |
209 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
8992697 |
tgtgttgatgatgtttattatttacaagttcatagtaatta |
8992737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 12995510 - 12995432
Alignment:
| Q |
130 |
agttgttttgatgatgtttgattaaaactaggtattaagtgtgttgatgatgtttattgtttacatgttcatagtaatta |
209 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||||||||||| | ||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
12995510 |
agttgttttggtgatgcttgattaaa-ctaggtattaagtattttgatgatgtttattgtttacatattcatagtcatta |
12995432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University