View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_114 (Length: 361)
Name: NF20384_high_114
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_114 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 7293788 - 7293439
Alignment:
| Q |
1 |
tcattatcctcctttagttcatctgtgtccaagtaaagggaaaattttctgtatgtgtcatcgaccaaatctagataggaggatggaagtttagcccgaa |
100 |
Q |
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| T |
7293788 |
tcattatcctcctttagttcatctgtgtccaagtaaagggaaaattttctgtatgtgtcatcgaccaaatctagataggaggatggaagtttagcccgaa |
7293689 |
T |
|
| Q |
101 |
cactgtcgttgaaagatataatttgattcacagtttgtttgctcccattcttcctcataaccactgaattgtagtaatcaaaatcttgaacaaaactggt |
200 |
Q |
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| T |
7293688 |
tactgtcgttgaaagatataatttgattcacagtttgtttgctcccattcttcctcataaccattgaattgtagtaatcaaaatcttgaacaaaactggt |
7293589 |
T |
|
| Q |
201 |
tgtgatattaccaaaggaggatctaacccatccagtagacaaaatggacttctttgcactagtcaagaacgttccgtttaaaccattaaagtcggttact |
300 |
Q |
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| T |
7293588 |
tgtgatattaccaaaggaggatctaacccatccagtagacaaaatggacttctttgcactagtcaagaacgttccgtttaaaccattaaagtcggttact |
7293489 |
T |
|
| Q |
301 |
agagattcaaccaaaggtttgtcaacatgattcacgagctctccttctgt |
350 |
Q |
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| T |
7293488 |
agagattcaaccaaaggtttgtcaacatgattcacgagctctccttctgt |
7293439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 350
Target Start/End: Complemental strand, 7290028 - 7289693
Alignment:
| Q |
15 |
tagttcatctgtgtccaagtaaagggaaaattttctgtatgtgtcatcgaccaaatctagataggaggatggaagtttagcccgaacactgtcgttgaaa |
114 |
Q |
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||||||||||| |||||||||||||||||| ||||||| |||||| |||||||| ||| ||||||| ||||||| ||||||||||||| ||| ||||||| |
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| T |
7290028 |
tagttcatctgagtccaagtaaagggaaaaatttctgtgtgtgtcgtcgaccaagtctggataggacgatggaaatttagcccgaacagtgttgttgaaa |
7289929 |
T |
|
| Q |
115 |
gatataatttgattcacagtttgtttgctcccattcttcctcataaccactgaattgtagtaatcaaaatcttgaacaaaactggttgtgatattaccaa |
214 |
Q |
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||||| | ||||||||||| |||||||| ||||||||||| || |||| |||| ||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
7289928 |
gatatgacttgattcacagcttgtttgcccccattcttcccgattaccattgaactgttgtaatcaaaatcttgaacaaaacttgttgtgatattaccaa |
7289829 |
T |
|
| Q |
215 |
aggaggatctaacccatccagtagacaaaatggacttctttgcactagtcaagaacgttccgtttaaaccattaaagtcggttactagagattcaaccaa |
314 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
7289828 |
aggaggatctaacccatccagtagccaaaatggacttctttgcacttgtcaagaaagttccgtttaaaccattaaagtcagctactagagattcaaccaa |
7289729 |
T |
|
| Q |
315 |
aggtttgtcaacatgattcacgagctctccttctgt |
350 |
Q |
| |
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|||||||||||| |||||||| |||| ||||||||| |
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| T |
7289728 |
aggtttgtcaacgtgattcacaagctttccttctgt |
7289693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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