View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_high_125 (Length: 348)
Name: NF20384_high_125
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_125 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 39933617 - 39933951
Alignment:
| Q |
1 |
aaacaatttgtcttttannnnnnnagaccatgctgtgttatatttcttctacggatattgttacttgagaattgttttatggaccccctaattcctcata |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39933617 |
aaacaatttgtcttttatttttttagaccatgctgtgttatatttcttctacggatattgttacttgagaattgttttatggaccccctaattcctcata |
39933716 |
T |
|
| Q |
101 |
agcccccaaaagatnnnnnnnn----tacccttataaggaaattgctctttaggcacctagnnnnnnnnctgaacggtggttaattaccgttcagtagga |
196 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||| |
|
|
| T |
39933717 |
agcccccaaaagataaaaaaaaaaaatacccttataaggaaattgctctttaggcacttagtaaaaaaactgaacggtggttaattaccattcagtagga |
39933816 |
T |
|
| Q |
197 |
cacgcgagaaacatatagtgtgataaaagtaagatcgtccatannnnnnnagcctagcctgttatatgtctatttgttggaggatccagggtgttcaagg |
296 |
Q |
| |
|
||||| |||||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39933817 |
cacgcaagaaacatatagtgagataaaagtatgatcgtccatatttttttagcctagcctgctatatgtctatttgttggtggatccagggtgttcaagg |
39933916 |
T |
|
| Q |
297 |
gctccaggcccactaaatttttattcccattttca |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
39933917 |
gctccaggcccactaaatttttattcccattttca |
39933951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University