View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_13 (Length: 659)
Name: NF20384_high_13
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 565; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 11 - 643
Target Start/End: Complemental strand, 39794712 - 39794086
Alignment:
| Q |
11 |
gatgaacactaacttaaaacattttcctnnnnnnncatgtaaaacagaaatgatttgaaatttatctccaacttcacaccttaaaatacatgagctcagc |
110 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39794712 |
gatgaacactaacttaaaacattttcctaaaaaaccatgtaaaacagaaatgatttgaaatttatctccaacttcacaccttaaaatacatgagctcagc |
39794613 |
T |
|
| Q |
111 |
atggtaaaactttaactagtaaattaactcaatcaattacagggatgttaataaccaagaaaaagaaactgatcttaacattaacatttcaattttaaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39794612 |
atggtaaaactttaactagtaaattaactcaatcaattacagggatgttaataaccaagaaaaagaaactgatcttaacatt------tcaattttaaaa |
39794519 |
T |
|
| Q |
211 |
agtatattgccgaaaacaactttttaaggaaataacaactttatgttacttatacgtatgcaaagaacatgcatacccaggtttttatgttttgtggggg |
310 |
Q |
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| T |
39794518 |
agtatattgccgaaaacaactttttaaggaaataacaactttatgttacttatacgtatgcaaagaacatgcatacccaggtttttatgttttgtggggg |
39794419 |
T |
|
| Q |
311 |
aatggaggggaagggttttctaaaagtcttgccttagaattaaaccaagtaaaacatgcgcaaagtcaaaataaaaaatgttcggtaccnnnnnnnngtt |
410 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39794418 |
aatggaggggaagggttttctaaaagtcttgccttagaattaaaccaagtaaaacatgcgcaaagtcaaaataaaaaatgttcggtaccttttttttgtt |
39794319 |
T |
|
| Q |
411 |
actcaagttttgagaagccaagcaatgattatttgcagaatccataaacttcatgttagctgtttctgtcaaaagtttttgaatactagctggatcatgg |
510 |
Q |
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| T |
39794318 |
actcaagttttgagaagccaagcaatgattatttgcagaatccataaacttcatgttagctgtttctgtcaaaagtttttgaatactagctggatcatgg |
39794219 |
T |
|
| Q |
511 |
tgatttgatgtatcatcttgtctaacgtatagcacatcctttcctcccatgctcaccccaactatgacatgagttccgaaacgttcaatgaacctagcac |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39794218 |
tgatttgatgtatcatcttgtctaacgtatagcacatcctttcctcccatgctcaccccaactatgacatgagttccgaaacgttcaatgaacctagcac |
39794119 |
T |
|
| Q |
611 |
gaatcagcataaattactttatcattgtgaagt |
643 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
39794118 |
gaatcagcataaattactttatcattgtgaagt |
39794086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 415 - 643
Target Start/End: Complemental strand, 39789590 - 39789362
Alignment:
| Q |
415 |
aagttttgagaagccaagcaatgattatttgcagaatccataaacttcatgttagctgtttctgtcaaaagtttttgaatactagctggatcatggtgat |
514 |
Q |
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|||| |||||||| |||||||||||||| |||||||||||| |||||| || ||||||||||||||||||||||||| ||||| |||||||||||| ||| |
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| T |
39789590 |
aagtcttgagaaggcaagcaatgattatctgcagaatccatgaacttcgtgctagctgtttctgtcaaaagtttttggatactggctggatcatggagat |
39789491 |
T |
|
| Q |
515 |
ttgatgtatcatcttgtctaacgtatagcacatcctttcctcccatgctcaccccaactatgacatgagttccgaaacgttcaatgaacctagcacgaat |
614 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| |||| |
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| T |
39789490 |
ctgatgtatcttcttgtctaatgtatagcacatcctttcctcccatgctcaccccgactatgacatgagttccaaaacgttcaatgaaccttgcatgaat |
39789391 |
T |
|
| Q |
615 |
cagcataaattactttatcattgtgaagt |
643 |
Q |
| |
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| |||||||||| |||||||||||||||| |
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| T |
39789390 |
cggcataaattattttatcattgtgaagt |
39789362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 408 - 614
Target Start/End: Complemental strand, 39783145 - 39782939
Alignment:
| Q |
408 |
gttactcaagttttgagaagccaagcaatgattatttgcagaatccataaacttcatgttagctgtttctgtcaaaagtttttgaatactagctggatca |
507 |
Q |
| |
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|||||| |||| ||||||||||| |||| |||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39783145 |
gttacttaagtcttgagaagccacatgatgactatttgcagaatccatgaacttcaggctagctgtttctgtcaaaagtttttgaatactagctggatca |
39783046 |
T |
|
| Q |
508 |
tggtgatttgatgtatcatcttgtctaacgtatagcacatcctttcctcccatgctcaccccaactatgacatgagttccgaaacgttcaatgaacctag |
607 |
Q |
| |
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||| ||| ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| || ||||| |||||||| ||||||||||||||||| | |
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| T |
39783045 |
tggggatctgatgtatcttcttgtctaacatatagcacatcctttcctcccatgctaaccccgacaatgacttgagttccaaaacgttcaatgaaccttg |
39782946 |
T |
|
| Q |
608 |
cacgaat |
614 |
Q |
| |
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|| |||| |
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|
| T |
39782945 |
catgaat |
39782939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 436 - 605
Target Start/End: Complemental strand, 39776448 - 39776279
Alignment:
| Q |
436 |
tgattatttgcagaatccataaacttcatgttagctgtttctgtcaaaagtttttgaatactagctggatcatggtgatttgatgtatcatcttgtctaa |
535 |
Q |
| |
|
||||||| ||||||||||| ||||||||| |||||||||| ||||||||||||| ||||||| ||||||| | || ||||||||| |||||||||| |
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| T |
39776448 |
tgattatcggcagaatccatgaacttcatgctagctgtttccttcaaaagtttttggatactagttggatcactgatatctgatgtatcttcttgtctaa |
39776349 |
T |
|
| Q |
536 |
cgtatagcacatcctttcctcccatgctcaccccaactatgacatgagttccgaaacgttcaatgaacct |
605 |
Q |
| |
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| || | ||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| |||||||| |
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| T |
39776348 |
cataaaacacatccttccctcccatgctcaccccgactatcacatgagttccaaaacgttctatgaacct |
39776279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 197 - 354
Target Start/End: Complemental strand, 39783423 - 39783268
Alignment:
| Q |
197 |
tttcaattttaaaaagtatattgccgaaaacaactttttaaggaaataacaactttatgttacttatacgtatgcaaagaacatgcatacccaggttttt |
296 |
Q |
| |
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||||| |||| |||||||||| | | ||||||| ||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| || ||||| |
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| T |
39783423 |
tttcagttttgaaaagtatatggtcaaaaacaattttttaaggggataacaacttt--gttacttataaatatgcaaagaacatgcataccaagattttt |
39783326 |
T |
|
| Q |
297 |
atgttttgtgggggaatggagg-ggaa-gggttttctaaaagtcttgccttagaattaaa |
354 |
Q |
| |
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||| |||||||| | |||||| |||| |||||||||| ||||| ||||||||||||||| |
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|
| T |
39783325 |
atg--ttgtggggaattggaggcggaaggggttttctacaagtcctgccttagaattaaa |
39783268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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