View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_high_131 (Length: 342)
Name: NF20384_high_131
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_131 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 34536455 - 34536648
Alignment:
| Q |
21 |
atgacctcttttcatagtcacttgttggaaagatctggagaaatagaaaccgaagagaattttcagcaggttaagaaagatacttgggcttcagctaata |
120 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| ||||||||||||||| ||||||| |||| || ||||||||||||||||||||||||||| ||||| |
|
|
| T |
34536455 |
atgacctcttttcatagtcacttgttgcga-gatatggagaaatagaaac-gaagagattttttagtaggttaagaaagatacttgggcttcagttaata |
34536552 |
T |
|
| Q |
121 |
gtattttctcttatcactcttccatgattcaagttcttggtcacgcagacaaacatcctattcatcgtcaggttcgttggtatccccccaaagatg |
216 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| |
|
|
| T |
34536553 |
gtattttctcttgtcactcttccatgattcaagtttttggtcacgcagacaaacatcctattcatcgccaggttcgttagtatccccccgaagatg |
34536648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 128 - 314
Target Start/End: Original strand, 34196258 - 34196444
Alignment:
| Q |
128 |
ctcttatcactcttccatgattcaagttcttggtcacgcagacaaacatcctattcatcgtcaggttcgttggtatccccccaaagatgg-tatatgaaa |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||| ||| |
|
|
| T |
34196258 |
ctcttatcactcttccatgattcaagttcttggtcacggagacaaacatcctattcatcgccaggttcgttggtat-tccccaaagatggttatataaaa |
34196356 |
T |
|
| Q |
227 |
gttaatgtggatggttcctctttcgatagcccaggtagtgcaggtttcggcggccttttaagaaatcattatggaggttggattcaag |
314 |
Q |
| |
|
||||||||| ||| ||||| |||| || || || | ||| ||||| |||| ||| ||||||||| ||||| | ||||||||||||| |
|
|
| T |
34196357 |
gttaatgtgtatgactcctccttcggtaatccgggcaatgctggtttaggcgacctcttaagaaattattataggggttggattcaag |
34196444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 3426514 - 3426464
Alignment:
| Q |
91 |
ttaagaaagatacttgggcttcagctaatagtattttctcttatcactctt |
141 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||| ||||| |||| |
|
|
| T |
3426514 |
ttaagaaagataattgggcttcaattaatagtattttctcatatcattctt |
3426464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 124 - 316
Target Start/End: Original strand, 48088895 - 48089085
Alignment:
| Q |
124 |
ttttctcttatcactcttccatgattcaagttcttggtcacgcagacaaacatcctattcatcgtcaggttcgttggtatccccccaaagatggt-atat |
222 |
Q |
| |
|
|||| ||||||||||||||||||| ||| ||||||||||||| | ||||||||| |||| || || ||||| |||||||||||| || |||||| |||| |
|
|
| T |
48088895 |
ttttttcttatcactcttccatgagtcatgttcttggtcacgtaaacaaacatc-tatttattgttaggtttgttggtatccccaca--gatggttatat |
48088991 |
T |
|
| Q |
223 |
gaaagttaatgtggatggttcctctttcgatagcccaggtagtgcaggtttcggcggccttttaagaaatcattatggaggttggattcaaggt |
316 |
Q |
| |
|
|||||||| ||||||| ||||||||||| || |||| | | |||| ||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48088992 |
aaaagttaacgtggatgattcctctttcggtaacccatgcaatgcaagtttcggtggccttttaagaaatcattatgggggttggattcaaggt |
48089085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 71 - 316
Target Start/End: Complemental strand, 31837270 - 31837026
Alignment:
| Q |
71 |
cgaagagaattttcagcaggttaagaaagatacttgggcttcagctaatagtattttctctt-atcactcttccatgattcaagttcttggtcacgcaga |
169 |
Q |
| |
|
|||||||| |||| || ||||||||||||||||||| |||| | || ||||||||| | || |||||||||| || ||| ||||||||||||| ||| |
|
|
| T |
31837270 |
cgaagagattttttagtaggttaagaaagatacttgaacttctgttactagtattttttttttatcactcttctat---tcatgttcttggtcacggaga |
31837174 |
T |
|
| Q |
170 |
caaacatcctattcatcgtcaggttcgttggtatccccccaaagat-ggtatatgaaagttaatgtggatggttcctctttcgatagcccaggtagtgca |
268 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| | || | ||| | |||||||| |||||||||| || |||| || | |||| | |||| |
|
|
| T |
31837173 |
caaacatcctattcatcgccaggttcgttggtatccccctgcatatagttatgtaaaagttaacatggatggttcttcattcggtaactcaggcaatgca |
31837074 |
T |
|
| Q |
269 |
ggtttcggcggccttttaagaaatcattatggaggttggattcaaggt |
316 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31837073 |
agtttcaacgaccttttaagaaatcattatgagggttggattcaaggt |
31837026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 303
Target Start/End: Complemental strand, 55883490 - 55883411
Alignment:
| Q |
224 |
aaagttaatgtggatggttcctctttcgatagcccaggtagtgcaggtttcggcggccttttaagaaatcattatggagg |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||| | ||| ||||| ||||| ||| ||| ||||||| ||||||| |
|
|
| T |
55883490 |
aaagttaatgtggatggttcctctttcgataacctagggaatgcgggttttggcggtcttataataaatcatcatggagg |
55883411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 5030952 - 5031028
Alignment:
| Q |
240 |
gttcctctttcgatagcccaggtagtgcaggtttcggcggccttttaagaaatcattatggaggttggattcaaggt |
316 |
Q |
| |
|
|||||||||||| || || || | ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5030952 |
gttcctctttcggtaacctagacaatgcaggtctcgacggccttttaagaaatcattatggaggttggattcaaggt |
5031028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 5030833 - 5030937
Alignment:
| Q |
100 |
atacttgggcttcagctaatagtattttctcttatcactcttccatgattcaagttcttggtcacgcagacaaacatcctattcatcgtcaggttcgttg |
199 |
Q |
| |
|
||||||||||||| | | ||| ||||| ||||||||||||||| |||||||| | |||| |||| ||| |||||||| || ||| |||| || |||| |
|
|
| T |
5030833 |
atacttgggcttctgttgataatatttactcttatcactcttctatgattcatgctcttaatcactaagaaaaacatcccatccattgtcaaatttgttg |
5030932 |
T |
|
| Q |
200 |
gtatc |
204 |
Q |
| |
|
||||| |
|
|
| T |
5030933 |
gtatc |
5030937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 28629281 - 28629331
Alignment:
| Q |
265 |
tgcaggtttcggcggccttttaagaaatcattatggaggttggattcaaggt |
316 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28629281 |
tgcaggcttcggcggccttttaagaaatcattatgg-ggttggattcaaggt |
28629331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University