View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_133 (Length: 342)
Name: NF20384_high_133
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_133 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 46 - 324
Target Start/End: Original strand, 171425 - 171709
Alignment:
| Q |
46 |
gaagaaattgtatatgatattgttgtaactcatgacaaacttgcaactgattatgatgattattcatttttggaggacgggcgagctttgtgactactca |
145 |
Q |
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| T |
171425 |
gaagaaattgtatatgatattgttgtaactcatgacaaacttgcaactgattatgatgattattcatttttggaagacggtcgagctttgtgactactca |
171524 |
T |
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| Q |
146 |
agttactaaaccaaccaagttgttcatttaactaatgaaacaaag-----aaccaaaccaaattgaatatcaccgatttattttggttcggttccacaac |
240 |
Q |
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| T |
171525 |
agttactaaaccaaccaagttgttcatttaactaatgaaacaaagaaccaaaccaaaccaaattgaatatcacccgtttattttggttcggttccacaac |
171624 |
T |
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| Q |
241 |
ttccataccatcagacatcagtgaataacaaatgcctagattg--------atatctcataaataattgaagacaagcccccattacatcct |
324 |
Q |
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| T |
171625 |
ttccatac-------catcagtgaataacaaatgcctagattgatccagacatatctcataaataattgaagacaatcccccattacatcct |
171709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 169521 - 169582
Alignment:
| Q |
98 |
atgatgattattcatttttggaggacgggcgagctttgtgactactcaagttactaaaccaa |
159 |
Q |
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| T |
169521 |
atgatgaagattcatttttggaggactggcaagctttgtgactactcaagttactagaccaa |
169582 |
T |
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