View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_135 (Length: 338)
Name: NF20384_high_135
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_135 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 37497106 - 37497414
Alignment:
| Q |
18 |
tctttttcctaaattatgtatcatatcatgcatgcaacatttcttcctatcccattattttttcaatccttctatgggaagaatcaaagtttccaccctt |
117 |
Q |
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| T |
37497106 |
tctttttcctaaattatgtatcatatcatgcatgcaacatttcttcctatcccattattttttcaatccttctatgggaagaatcaaagtttccaccctt |
37497205 |
T |
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| Q |
118 |
ttctctgctaataatggccatcactacactcttcctcttgtaaacaaacccaatacacacaaagatcatttcccttcttcagtcttaaaatgttttcgac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37497206 |
ttctctgctaataatggccatcactacactcttcctcttgtaaacaaacccaatacacacaaagatcatttcccttcttcagtcttaaaatgttttcgac |
37497305 |
T |
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| Q |
218 |
gatttatctgtggaagtatgcttctattcttctatgattttccataacttgttaatttagtagttaatgttatgctaaagtttcnnnnnnnnggtgtttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37497306 |
gatttatctgtggaagtatgcttctattcttctatgattttccataacttgttaatttagtagttaatgttatgctaaagtttcttttttttggtgtttt |
37497405 |
T |
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| Q |
318 |
acttatctg |
326 |
Q |
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||||||||| |
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| T |
37497406 |
acttatctg |
37497414 |
T |
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