View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_139 (Length: 328)
Name: NF20384_high_139
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_139 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 311
Target Start/End: Original strand, 2211771 - 2212073
Alignment:
| Q |
9 |
aatatccaaataatcctatgcttggtagccgagagattgtggacgggaaggtaaagtcttggttactgtataaatctttaatttttcatttttggaaatt |
108 |
Q |
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| T |
2211771 |
aatatccaaataatcctatgcttggtagccgagagattgtggacgggaaggtaaagtattggttactgtataaatctttaattttttatttttggaaatt |
2211870 |
T |
|
| Q |
109 |
ttcatgccatagcttgactggtcatggattttgacttatttaaatgctcgcatgttattattacacttaacagcatggcaagtacaagtggcaaacttac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2211871 |
ttcatgccatagcttgactggtcatggattttgacttatttaaatgctcgcatgttattattacacttaacagcatggcaagtacaagtggcaaacatac |
2211970 |
T |
|
| Q |
209 |
aaagaagtatatgacatggtgatcaaagtcggaaattctatccgcagctgtggttatggagaagtaagtcttctgtctcttctcttgattaccagaaaat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2211971 |
aaagaagtatatgacatggtgatcaaagtcggaaattctatccgcagctgtggttatggagaagtaagtcttctgtctcttctcttgattaccagaaaat |
2212070 |
T |
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| Q |
309 |
gaa |
311 |
Q |
| |
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||| |
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| T |
2212071 |
gaa |
2212073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 311
Target Start/End: Original strand, 2199108 - 2199405
Alignment:
| Q |
9 |
aatatccaaataatcctatgcttggtagccgagagattgtggacgggaaggtaaagtcttggttactgtataaatctttaatttttcatttttggaaatt |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | | || |||||||||||| |
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| T |
2199108 |
aatatccaaataatcctatgcttggtagccgagagattgtggatgggaaggtaaagtcttggttactgtataaatctct----tgtc-tttttggaaatt |
2199202 |
T |
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| Q |
109 |
ttcatgccatagcttgactggtcatggattttgactt-atttaaatgctcgcatgttattattacacttaacagcatggcaagtacaagtggcaaactta |
207 |
Q |
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| T |
2199203 |
tccttgccatagcttaaccggtcatggattt-gactttatttaaatgctcacatgttattattacacttaacagcatggcaagtacaagtggcaaactta |
2199301 |
T |
|
| Q |
208 |
caaagaagtatatgacatggtgatcaaagtcggaaattctatccgcagctgtggttatggagaagtaagtcttctgtctcttctcttgattaccagaaaa |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
2199302 |
caaagaagtatatgacatggtgatcaaagtcggaaattctatccgcagctgtggttatggagaagtaagtcttacgtttcttctcttgattaccagaaaa |
2199401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 41933553 - 41933502
Alignment:
| Q |
184 |
tggcaagtacaagtggcaaacttacaaagaagtatatgacatggtgatcaaa |
235 |
Q |
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|||||| | ||| |||||||||||||||||||| |||||| ||||||||||| |
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| T |
41933553 |
tggcaaattcaattggcaaacttacaaagaagtgtatgacttggtgatcaaa |
41933502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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