View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_high_14 (Length: 647)

Name: NF20384_high_14
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_high_14
NF20384_high_14
[»] chr4 (4 HSPs)
chr4 (51-632)||(44573740-44574318)
chr4 (50-117)||(48795730-48795797)
chr4 (10-55)||(44574342-44574387)
chr4 (10-55)||(48795661-48795707)
[»] chr7 (2 HSPs)
chr7 (51-216)||(22489974-22490137)
chr7 (10-55)||(22490161-22490207)
[»] chr5 (2 HSPs)
chr5 (51-216)||(25383268-25383431)
chr5 (10-55)||(25383198-25383244)
[»] chr6 (4 HSPs)
chr6 (179-216)||(10123149-10123186)
chr6 (10-40)||(10123184-10123214)
chr6 (183-216)||(10123024-10123057)
chr6 (179-216)||(19306583-19306620)
[»] chr1 (2 HSPs)
chr1 (10-40)||(28244940-28244970)
chr1 (179-216)||(28244905-28244942)


Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 51 - 632
Target Start/End: Complemental strand, 44574318 - 44573740
Alignment:
Q  51 tttcacaagtttccttccaagaaagtgtgacaattcttctatattagtatttcaaactcagacttcatcaatctcttaaaatattcaatctcatttttta 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44574318 tttcacaagtttccttccaagaaagtgtgacaattcttctatattagtatttcaaactcagacttcatcaatctcttaaaatattcaatctcatttttta 44574219  T
Q  151 cgctgccagttattattaagtcatccatatatatatgcacactgtaattgaggatgtttatgatttctttaaattccacgtacgttaaacttaagtgttc 250  Q
    ||||||||||||||||||||||||||||| ||||  ||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||  |    
T  44574218 cgctgccagttattattaagtcatccatacatat--gcacactataattaaggatgtttatgatttctttaaattccacgtacattaaacttaagtgcac 44574121  T
Q  251 caagcccataaagagcattagaaaggaatatatcctacaactttgnnnnnnnctgaaaaggcacatgattgtaacaaagtgcaccaaaagtattcaaatg 350  Q
    || ||| ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44574120 caggcc-ataaagagcattagaaaggaatatatcctacaactttgtttttctctgaaaaggcacatgattgtaacaaagtgcaccaaaagtattcaaatg 44574022  T
Q  351 attcattgatagctttctcccagatcaggtctctttcggaaccactcctataatctctgtgtagaacatttgttgagaatgtacattggtgcacacacaa 450  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44574021 attcattgatagctttctcccagatcatgtctctttcggaaccactcctataatctctgtgtagaacatttgttgagaatgtacattggtgcacacacaa 44573922  T
Q  451 tttctcccctaaatgaatgtagcaacactttctttttcacatgcttgctgatctatgaggttctctccattctgagccatggagtttatggtacctcgca 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44573921 tttctcccctaaatgaatgtagcaacactttctttttcacatgcttgctgatctatgaggttctctccattatgagccatggagtttatggtacctcgca 44573822  T
Q  551 cctttacaaagaaatcaccccttcatctgaagcaattcatattgtttcctcaaaccttgtagccttactttcttcaacttat 632  Q
     |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  44573821 actttacaaagaaatcacccctttatctgaagcaattcatattatttcctcaaaccttgtagccttactttcttcaccttat 44573740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 48795730 - 48795797
Alignment:
Q  50 ctttcacaagtttccttccaagaaagtgtgacaattcttctatattagtatttcaaactcagacttca 117  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||    
T  48795730 ctttcacaagtttccttccaagaaagtatgacaattattctatattagcatttcaaactcagacttca 48795797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 44574387 - 44574342
Alignment:
Q  10 tcatcatattgaacatttttagcacctcataacataatttctttca 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  44574387 tcatcatattgaacatttttagcacctcataacataatttctttca 44574342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 48795661 - 48795707
Alignment:
Q  10 tcatcatattgaacatttttagcacctca-taacataatttctttca 55  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||    
T  48795661 tcatcatattgaacatttttagcacctcatttacataatttctttca 48795707  T

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Target: chr7 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 51 - 216
Target Start/End: Complemental strand, 22490137 - 22489974
Alignment:
Q  51 tttcacaagtttccttccaagaaagtgtgacaattcttctatattagtatttcaaactcagacttcatcaatctcttaaaatattcaatctcatttttta 150  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22490137 tttcacaagtttcctttcaagaaagtatgacaattcttctatattagcatttcaaactcagacttcatcaatctcttaaaatattcaatctcatttttta 22490038  T
Q  151 cgctgccagttattattaagtcatccatatatatatgcacactgtaattgaggatgtttatgattt 216  Q
    ||||| ||| ||| ||||||||||||||||  ||||||||||| ||||||||||||||||||||||    
T  22490037 cgctgtcagatatcattaagtcatccatat--atatgcacactataattgaggatgtttatgattt 22489974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 22490207 - 22490161
Alignment:
Q  10 tcatcatattgaacatttttagcacctca-taacataatttctttca 55  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||    
T  22490207 tcatcatattgaacatttttagcacctcacttacataatttctttca 22490161  T

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Target: chr5 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 51 - 216
Target Start/End: Original strand, 25383268 - 25383431
Alignment:
Q  51 tttcacaagtttccttccaagaaagtgtgacaattcttctatattagtatttcaaactcagacttcatcaatctcttaaaatattcaatctcatttttta 150  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25383268 tttcacaagtttcctttcaagaaagtatgacaattcttctatattagcatttcaaactcagacttcatcaatctcttaaaatattcaatctcatttttta 25383367  T
Q  151 cgctgccagttattattaagtcatccatatatatatgcacactgtaattgaggatgtttatgattt 216  Q
    ||||| ||| ||| ||||||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  25383368 cgctgtcagatatcattaagtcatcc--atatatatgcacactataattgaggatgtttatgattt 25383431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 25383198 - 25383244
Alignment:
Q  10 tcatcatattgaacatttttagcacctca-taacataatttctttca 55  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||    
T  25383198 tcatcatattgaacatttttagcacctcatttacataatttctttca 25383244  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 10123186 - 10123149
Alignment:
Q  179 atatatatgcacactgtaattgaggatgtttatgattt 216  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  10123186 atatatatgcacactataattgaggatgtttatgattt 10123149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 40
Target Start/End: Complemental strand, 10123214 - 10123184
Alignment:
Q  10 tcatcatattgaacatttttagcacctcata 40  Q
    |||||||||||||||||||||||||||||||    
T  10123214 tcatcatattgaacatttttagcacctcata 10123184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 10123057 - 10123024
Alignment:
Q  183 atatgcacactgtaattgaggatgtttatgattt 216  Q
    ||||||||||| ||||||||||||||||||||||    
T  10123057 atatgcacactataattgaggatgtttatgattt 10123024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 19306620 - 19306583
Alignment:
Q  179 atatatatgcacactgtaattgaggatgtttatgattt 216  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  19306620 atatatatgcacactataattaaggatgtttatgattt 19306583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 40
Target Start/End: Complemental strand, 28244970 - 28244940
Alignment:
Q  10 tcatcatattgaacatttttagcacctcata 40  Q
    |||||||||||||||||||||||||||||||    
T  28244970 tcatcatattgaacatttttagcacctcata 28244940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 28244942 - 28244905
Alignment:
Q  179 atatatatgcacactgtaattgaggatgtttatgattt 216  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  28244942 atatatatgcacactataattgaggatgtttatcattt 28244905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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