View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_140 (Length: 327)
Name: NF20384_high_140
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_140 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 41557387 - 41557683
Alignment:
| Q |
17 |
gatagatcttccaaattcattggagagagtgaaagaaactggtcttaggcttgcaagttattgcaaacgtttcaatgttccttttgagtacaatggtatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41557387 |
gatagatcttccaaattcattggagagagtgaaagaaactggtcttaggcttgcaagttattgcaaacgtttcaatgttccttttgagtacaatggtatt |
41557486 |
T |
|
| Q |
117 |
gcaaaaaattgggaaagtatcaaagttgaagattttaagataaggaaaaatgagtttgttgctgtgaattgtttgtttaagtttgagaatctaccggatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41557487 |
gcaaaaaattgggaaagtatcaaagttgaagattttaacataaggaaaaacgagtttgttgctgtgaattgtttgtttaagtttgagaatctactggatg |
41557586 |
T |
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| Q |
217 |
agacagtagtttcggagaatccgaagggtgctgttttggatttgattagaaagacaaatccgaatatatttattcatagcattgttaatggtggtta |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41557587 |
agacagtagtttcggagaatccgaagggtgctgttttggatttgattagaaagacaaatccgaatatatttattcatagcattgttaatggtggtta |
41557683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 41583516 - 41583812
Alignment:
| Q |
17 |
gatagatcttccaaattcattggagagagtgaaagaaactggtcttaggcttgcaagttattgcaaacgtttcaatgttccttttgagtacaatggtatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41583516 |
gatagatcttccaaattcattggagagagtgaaagaaactggtcttaggcttgcaagttattgcaaacgtttcaatgttccttttgagtacaatggtatt |
41583615 |
T |
|
| Q |
117 |
gcaaaaaattgggaaagtatcaaagttgaagattttaagataaggaaaaatgagtttgttgctgtgaattgtttgtttaagtttgagaatctaccggatg |
216 |
Q |
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| T |
41583616 |
gcaaaaaattgggaaagtatcaaagttgaagattttaagataaggaaaaacgagtttgttgctgtgaattgtttgtttaagtttgagaatctactggatg |
41583715 |
T |
|
| Q |
217 |
agacagtagtttcggagaatccgaagggtgctgttttggatttgattagaaagacaaatccgaatatatttattcatagcattgttaatggtggtta |
313 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41583716 |
agacagtagtttcggagaatccgaagggtgatgttttggatttgattagaaagacaaatccgaatatatttattcatagcattgttaatggtggtta |
41583812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 314
Target Start/End: Original strand, 41590047 - 41590344
Alignment:
| Q |
17 |
gatagatcttccaaattcattggagagagtgaaagaaactggtcttaggcttgcaagttattgcaaacgtttcaatgttccttttgagtacaatggtatt |
116 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41590047 |
gatagatcttccaaattcattggagagagtgaatgaaacaggtcttaggctttcaagttattgcaaacgtttcaatgttccttttgagtacaatggtatt |
41590146 |
T |
|
| Q |
117 |
gcaaaaaattgggaaagtatcaaagttgaagattttaagataaggaaaaatgagtttgttgctgtgaattgtttgtttaagtttgagaatctaccggatg |
216 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||| |||| |
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| T |
41590147 |
gcaaaaaattgggaaagtatcaaagttcaggattttaagataaggaaaaatgagtttgttgcagtgacttgtgtgtttaagtttgagaatctacctgatg |
41590246 |
T |
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| Q |
217 |
agacagtagtttcggagaatccgaagggtgctgttttggatttgattagaaagacaaatccgaatatatttattcatagcattgttaatggtggttat |
314 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41590247 |
agacagttgtttcggagaatccgaggggtgctgttttggatttgattaagaaggcaaatccgaatatatttattcatagcattgttaatggtggttat |
41590344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 17 - 314
Target Start/End: Original strand, 41571099 - 41571396
Alignment:
| Q |
17 |
gatagatcttccaaattcattggagagagtgaaagaaactggtcttaggcttgcaagttattgcaaacgtttcaatgttccttttgagtacaatggtatt |
116 |
Q |
| |
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||||||||||||||||| |||||||||||||| | ||| ||||||||||||||| ||||||| |||||||| |||||||||||||| |||||||||| |
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| T |
41571099 |
gatagatcttccaaatttgttggagagagtgaatggaacaggtcttaggcttgcagcttattgcgaacgtttcggtgttccttttgagttcaatggtatt |
41571198 |
T |
|
| Q |
117 |
gcaaaaaattgggaaagtatcaaagttgaagattttaagataaggaaaaatgagtttgttgctgtgaattgtttgtttaagtttgagaatctaccggatg |
216 |
Q |
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|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| |
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| T |
41571199 |
gcgaaaaattgggaaagtatcaaagttgaggattttaagataaggaaaaatgagtttgttgctgtgaattgttattttaaatttgagaatctacttgatg |
41571298 |
T |
|
| Q |
217 |
agacagtagtttcggagaatccgaagggtgctgttttggatttgattagaaagacaaatccgaatatatttattcatagcattgttaatggtggttat |
314 |
Q |
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|||| || | | |||||||||| | ||||||||||||||||||||||| ||| ||||||||||||||||| |||| ||||||||||||||| ||||| |
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| T |
41571299 |
agacggttgctccggagaatccaaggggtgctgttttggatttgattaagaaggcaaatccgaatatatttgttcaaagcattgttaatggttgttat |
41571396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 69 - 169
Target Start/End: Complemental strand, 23916537 - 23916437
Alignment:
| Q |
69 |
gcaagttattgcaaacgtttcaatgttccttttgagtacaatggtattgcaaaaaattgggaaagtatcaaagttgaagattttaagataaggaaaaatg |
168 |
Q |
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||||| ||||| ||||||| |||||||| ||||||| ||||| ||||||| | || ||||||| ||||||||||| || || ||||||| |||||||| |
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| T |
23916537 |
gcaaggtattgtgaacgttttaatgttccgtttgagttcaatgctattgcacagaaatgggaaaccatcaaagttgaggacttgaagataaagaaaaatg |
23916438 |
T |
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| Q |
169 |
a |
169 |
Q |
| |
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| |
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| T |
23916437 |
a |
23916437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 23904977 - 23905013
Alignment:
| Q |
75 |
tattgcaaacgtttcaatgttccttttgagtacaatg |
111 |
Q |
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|||||||| ||||||||||||||||| |||||||||| |
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| T |
23904977 |
tattgcaagcgtttcaatgttcctttcgagtacaatg |
23905013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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