View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_high_142 (Length: 327)

Name: NF20384_high_142
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_high_142
NF20384_high_142
[»] chr6 (9 HSPs)
chr6 (1-312)||(2297301-2297612)
chr6 (9-253)||(2307408-2307652)
chr6 (9-253)||(2340089-2340333)
chr6 (62-211)||(2261232-2261381)
chr6 (13-188)||(2351546-2351721)
chr6 (55-189)||(14711313-14711447)
chr6 (52-194)||(14753379-14753521)
chr6 (31-172)||(2363195-2363336)
chr6 (62-172)||(2368972-2369082)
[»] scaffold0408 (1 HSPs)
scaffold0408 (63-194)||(553-684)
[»] chr3 (1 HSPs)
chr3 (31-172)||(4305893-4306034)
[»] chr4 (1 HSPs)
chr4 (13-283)||(5804121-5804391)


Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 2297301 - 2297612
Alignment:
Q  1 catatcaaaaagggaactcgattgatgccaaatctatggaagattcatagagaccctagggtttggccagatccattagaattcaaacctgaaaggtttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||    
T  2297301 catatcaaaaagggaactcgattgatgccaaatctatggaagattcatagagactctagggtttggtcagatccattagaatttaaacctgaaaggtttc 2297400  T
Q  101 ttaccactcacaaagatgttgatcttgggggtcaaaattttgagttgttgccatttggaagtggaagaaggaggtgtgctggaatatcccttggtttgca 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2297401 ttaccactaacaaagatgttgatcttgggggtcaaaattttgagttgttgccatttggaagtggaagaaggaggtgtgctggaatgtcccttggtttgca 2297500  T
Q  201 tatgcttcattatattctagctaatttcttgcattcttttgacatcttgaatctatctcctgaatcaattgatttgactgaagtccttgattttactagc 300  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  2297501 tatgcttcattatattctagctaatttcttgcattcttttgatatcttgaatctatctccagaatcaattgatttgactgaagtccttgaatttactagc 2297600  T
Q  301 accaaagttact 312  Q
    ||||||||||||    
T  2297601 accaaagttact 2297612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 2307408 - 2307652
Alignment:
Q  9 aaagggaactcgattgatgccaaatctatggaagattcatagagaccctagggtttggccagatccattagaattcaaacctgaaaggtttcttaccact 108  Q
    ||||||||||||||| ||  ||||||| |||| |||| | |  || ||||   ||||||||||||||||||| |||||||| ||||| ||||||||||||    
T  2307408 aaagggaactcgattaatcacaaatctttggaggattaacacggatcctaatatttggccagatccattagagttcaaaccagaaagatttcttaccact 2307507  T
Q  109 cacaaagatgttgatcttgggggtcaaaattttgagttgttgccatttggaagtggaagaaggaggtgtgctggaatatcccttggtttgcatatgcttc 208  Q
    || |||||||||||| || |||||   ||||||| | | ||||||||||||||||| |||||||  ||  |||||||||| |||||  | || ||||| |    
T  2307508 cataaagatgttgatgttaggggtagtaattttgtgctattgccatttggaagtggtagaaggatatgccctggaatatcacttggacttcaaatgctgc 2307607  T
Q  209 attatattctagctaatttcttgcattcttttgacatcttgaatc 253  Q
    |||  |||||||||| ||| |||||||| ||||| ||||| ||||    
T  2307608 atttcattctagctagttttttgcattcctttgatatcttaaatc 2307652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 2340089 - 2340333
Alignment:
Q  9 aaagggaactcgattgatgccaaatctatggaagattcatagagaccctagggtttggccagatccattagaattcaaacctgaaaggtttcttaccact 108  Q
    ||||||||||||||| ||  ||||||| ||||||||||| | ||| ||||| |||||||||||||||||||| |||||||| ||||||||| ||||||||    
T  2340089 aaagggaactcgattaatcacaaatctttggaagattcaaacagatcctagtgtttggccagatccattagagttcaaaccagaaaggttttttaccact 2340188  T
Q  109 cacaaagatgttgatcttgggggtcaaaattttgagttgttgccatttggaagtggaagaaggaggtgtgctggaatatcccttggtttgcatatgcttc 208  Q
    || |||| ||||||| || | ||| |  |||||||  | || |||||||||||||| |||||||  ||| ||||||||||  ||||  | || ||||| |    
T  2340189 cataaagctgttgatgttagaggtaatcattttgaactattaccatttggaagtggtagaaggaaatgtcctggaatatcgtttggacttcaaatgctgc 2340288  T
Q  209 attatattctagctaatttcttgcattcttttgacatcttgaatc 253  Q
    |||  |  ||||||| ||| |||||||| ||||| ||||| ||||    
T  2340289 atttcaccctagctagttttttgcattcctttgatatcttaaatc 2340333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 62 - 211
Target Start/End: Complemental strand, 2261381 - 2261232
Alignment:
Q  62 tttggccagatccattagaattcaaacctgaaaggtttcttaccactcacaaagatgttgatcttgggggtcaaaattttgagttgttgccatttggaag 161  Q
    ||||||||||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||     ||||||| ||||||||||||| |||||||||||    
T  2261381 tttggccagatccattagagttcaaaccagaaagatttcttaccactcacaaaaatgttgatgccaagggtcaacattttgagttgttaccatttggaag 2261282  T
Q  162 tggaagaaggaggtgtgctggaatatcccttggtttgcatatgcttcatt 211  Q
    ||| |||||||  ||| | ||||||||  ||||| | |||||| ||||||    
T  2261281 tggtagaaggatatgtccaggaatatcttttggtcttcatatgattcatt 2261232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 2351546 - 2351721
Alignment:
Q  13 ggaactcgattgatgccaaatctatggaagattcatagagaccctagggtttggccagatccattagaattcaaacctgaaaggtttcttaccactcaca 112  Q
    |||||||| || |||| |||||| ||||||||||| |  || ||||| |||||| ||||||||||||| |||||||| |||||||||||||||||||| |    
T  2351546 ggaactcggttaatgctaaatctttggaagattcaaactgatcctagtgtttggtcagatccattagagttcaaaccagaaaggtttcttaccactcata 2351645  T
Q  113 aagatgttgatcttgggggtcaaaattttgagttgttgccatttggaagtggaagaaggaggtgtgctggaatatc 188  Q
    ||| ||||||| || | ||| |  |||||||  |  | |||||||||||||| ||||||| |||| ||| ||||||    
T  2351646 aagttgttgatgttagaggtaatcattttgaactactaccatttggaagtggtagaaggaagtgtcctgcaatatc 2351721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 55 - 189
Target Start/End: Complemental strand, 14711447 - 14711313
Alignment:
Q  55 cctagggtttggccagatccattagaattcaaacctgaaaggtttcttaccactcacaaagatgttgatcttgggggtcaaaattttgagttgttgccat 154  Q
    ||||| |||||||| |||||||| || ||||||||||| || |||||||| ||||| |||||||||||| || | ||| |  |||||||| | || ||||    
T  14711447 cctagtgtttggccggatccattggagttcaaacctgagagatttcttacaactcataaagatgttgatgttagaggtaatcattttgagcttttaccat 14711348  T
Q  155 ttggaagtggaagaaggaggtgtgctggaatatcc 189  Q
    |||||||||||||||||| |||| |||||||||||    
T  14711347 ttggaagtggaagaaggatgtgtcctggaatatcc 14711313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 52 - 194
Target Start/End: Complemental strand, 14753521 - 14753379
Alignment:
Q  52 gaccctagggtttggccagatccattagaattcaaacctgaaaggtttcttaccactcacaaagatgttgatcttgggggtcaaaattttgagttgttgc 151  Q
    |||||||| |||||||| |||||||| || ||||| ||||  || |||||||| ||||| |||||||||||| ||  ||||||  |||||||||| || |    
T  14753521 gaccctagcgtttggccggatccattggagttcaagcctgggagatttcttacaactcataaagatgttgatgttaagggtcatcattttgagtttttac 14753422  T
Q  152 catttggaagtggaagaaggaggtgtgctggaatatcccttgg 194  Q
    |||||||||||||||||||||  ||| ||||||||||| ||||    
T  14753421 catttggaagtggaagaaggatttgtcctggaatatcctttgg 14753379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 172
Target Start/End: Original strand, 2363195 - 2363336
Alignment:
Q  31 aatctatggaagattcatagagaccctagggtttggccagatccattagaattcaaacctgaaaggtttcttaccactcacaaagatgttgatcttgggg 130  Q
    ||||| ||||||||||| |  || ||||  |||||| |||||||||||| ||||||||| || ||||||||||| || || |||||| ||||| || | |    
T  2363195 aatctttggaagattcacactgatcctaatgtttggtcagatccattagtattcaaaccggagaggtttcttacaacgcataaagatattgattttagag 2363294  T
Q  131 gtcaaaattttgagttgttgccatttggaagtggaagaagga 172  Q
    || |  |||||||| | || ||||||||| |||| |||||||    
T  2363295 gtaatcattttgagctattaccatttggaggtggtagaagga 2363336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 172
Target Start/End: Original strand, 2368972 - 2369082
Alignment:
Q  62 tttggccagatccattagaattcaaacctgaaaggtttcttaccactcacaaagatgttgatcttgggggtcaaaattttgagttgttgccatttggaag 161  Q
    ||||| || ||||||| ||||||||||| ||  |||||||||| || || ||||| |||||| || | |||||  |||||||| | || ||||||||| |    
T  2368972 tttggtcaaatccattggaattcaaaccagagcggtttcttactacccataaagacgttgatgttagaggtcatcattttgagctattaccatttggagg 2369071  T
Q  162 tggaagaagga 172  Q
    ||| |||||||    
T  2369072 tggtagaagga 2369082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 63 - 194
Target Start/End: Original strand, 553 - 684
Alignment:
Q  63 ttggccagatccattagaattcaaacctgaaaggtttcttaccactcacaaagatgttgatcttgggggtcaaaattttgagttgttgccatttggaagt 162  Q
    |||||| |||||||| || ||||| ||||  || |||||||| ||||| |||||||||||| ||  ||||||  |||||||||| || ||||||||||||    
T  553 ttggccggatccattggagttcaagcctgggagatttcttacaactcataaagatgttgatgttaagggtcatcattttgagtttttaccatttggaagt 652  T
Q  163 ggaagaaggaggtgtgctggaatatcccttgg 194  Q
    ||||||||||  ||| ||||||||||| ||||    
T  653 ggaagaaggatttgtcctggaatatcctttgg 684  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 172
Target Start/End: Original strand, 4305893 - 4306034
Alignment:
Q  31 aatctatggaagattcatagagaccctagggtttggccagatccattagaattcaaacctgaaaggtttcttaccactcacaaagatgttgatcttgggg 130  Q
    |||||||||||||| ||||  || |||| |||||||  ||| || ||||| |||||||| ||| |||||||||| ||||| |||| ||||||| ||  ||    
T  4305893 aatctatggaagatccatactgatcctaaggtttggttagaacctttagagttcaaaccagaacggtttcttactactcataaaggtgttgatgttaagg 4305992  T
Q  131 gtcaaaattttgagttgttgccatttggaagtggaagaagga 172  Q
    ||||  |||||||||| || |||||||||||||| |||||||    
T  4305993 gtcatcattttgagttattaccatttggaagtggtagaagga 4306034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 283
Target Start/End: Complemental strand, 5804391 - 5804121
Alignment:
Q  13 ggaactcgattgatgccaaatctatggaagattcatagagaccctagggtttggccagatccattagaattcaaacctgaaaggtttcttaccactcaca 112  Q
    ||||||||||| ||  ||||||| |||||||| || | ||| | ||| ||||||||| |||||||||| || || || |||||||||||||| ||||| |    
T  5804391 ggaactcgattaatcacaaatctttggaagatccaaacagatcttagtgtttggccaaatccattagattttaagccagaaaggtttcttacaactcata 5804292  T
Q  113 aagatgttgatcttgggggtcaaaattttgagttgttgccatttggaagtggaagaaggaggtgtgctggaatatcccttggtttgcatatgcttcatta 212  Q
    ||||| ||||| || ||||| |  |||||||  |    |||||||||||||| |||||||  ||| |||||||||   ||||  | || ||| | ||||     
T  5804291 aagatattgatgttaggggtaatcattttgaactacaaccatttggaagtggtagaaggaaatgtcctggaatatgttttggacttcaaatggtgcattt 5804192  T
Q  213 tattctagctaatttcttgcattcttttgacatcttgaatctatctcctgaatcaattgatttgactgaag 283  Q
    || |||||||| ||| |||||||| ||||| ||||| |||| | | ||||||   |||||| |||||||||    
T  5804191 tactctagctagttttttgcattcctttgatatcttaaatccaacacctgaacttattgatatgactgaag 5804121  T

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