View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_high_143 (Length: 325)
Name: NF20384_high_143
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_143 |
 | |
|
| [»] scaffold0006 (4 HSPs) |
| | |
|
| [»] scaffold0069 (2 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0068 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 41 - 310
Target Start/End: Complemental strand, 20768399 - 20768130
Alignment:
| Q |
41 |
caagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatcagtgttccagtctgacaatgttg |
140 |
Q |
| |
|
||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20768399 |
caagcttcaatgtatatgcaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatcagtgttccagtctgacaatgttg |
20768300 |
T |
|
| Q |
141 |
gttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttgataacacactcaacagcaaagagtcttg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20768299 |
gttccatcttctgtttcctttagttatatgacctttttggaggtaacaaactgcaatgggttgaaaaaattgataacacactcaacagcaaagagtcttg |
20768200 |
T |
|
| Q |
241 |
tcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
310 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20768199 |
tcaaactcacaacaatgaagattaaaatgtgtaattggcttgaggatatagtgaacggtaaagaagatga |
20768130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 20780851 - 20780560
Alignment:
| Q |
19 |
agttggaattatggcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatca |
118 |
Q |
| |
|
||||| ||||| |||| ||| ||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20780851 |
agttgaaattacggcacctgagcaagcttcaatgtatatgcaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatca |
20780752 |
T |
|
| Q |
119 |
gtgttccagtctgacaatgttggttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttgataaca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20780751 |
gtgttccagtctgacaatgttggttccatcttctgtttcctttagttatatgacctttttggaggtaacaaactgcaatgggttgaaaaatttgataaca |
20780652 |
T |
|
| Q |
219 |
cactcaacagcaaagagtcttgtcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
20780651 |
cactcaacagcaaagagtcttgtcaaactcgcaacaatgaagattaaaatgtgtaattggcttgaggatatagtgaatggtaaagaagatga |
20780560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 41 - 310
Target Start/End: Complemental strand, 20771035 - 20770766
Alignment:
| Q |
41 |
caagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatcagtgttccagtctgacaatgttg |
140 |
Q |
| |
|
||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20771035 |
caagcttcaatgtatatgcaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatcagtgttccagtctgacaatgttg |
20770936 |
T |
|
| Q |
141 |
gttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttgataacacactcaacagcaaagagtcttg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20770935 |
gttccatcttctgtttcctttagttatatgacctttttggaggtaacaaactgcaatgggttgaaaaatttgataacacactcaacagcaaagagtcttg |
20770836 |
T |
|
| Q |
241 |
tcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
310 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
20770835 |
tcaaactcgcaacaatgaagattaaaatgtgtaattggcttgaggatatagtgaatggtaaagaagatga |
20770766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 44 - 310
Target Start/End: Complemental strand, 20849028 - 20848762
Alignment:
| Q |
44 |
gcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatcagtgttccagtctgacaatgttggtt |
143 |
Q |
| |
|
|||| ||| |||||| ||||||||| ||||||| |||||||||||||| ||| || |||||||| ||| |||||||||||||||||| |||||| ||| |
|
|
| T |
20849028 |
gcttcaatgtatatgcaaagaaggagttcaaattgacccagttctacattttgttaaaagcattcgggttcatcagtgttccagtctgataatgttagtt |
20848929 |
T |
|
| Q |
144 |
ccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttgataacacactcaacagcaaagagtcttgtca |
243 |
Q |
| |
|
||||| |||||| |||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20848928 |
ccatcctctgttacctttagttacatgaccaatttggaggtaacaaactgcaatgggttgaaaaatttgataacacactcaacagcaaagagtcttgtca |
20848829 |
T |
|
| Q |
244 |
aactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
310 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20848828 |
aactcacaacaatgaagattaaaatgtgtaattggcttgaggatatagtgaacggtaaagaagatga |
20848762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 41 - 248
Target Start/End: Complemental strand, 20778193 - 20777986
Alignment:
| Q |
41 |
caagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatcagtgttccagtctgacaatgttg |
140 |
Q |
| |
|
||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20778193 |
caagcttcaatgtatatgcaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatcagtgttccagtctgacaatgttg |
20778094 |
T |
|
| Q |
141 |
gttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttgataacacactcaacagcaaagagtcttg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20778093 |
gttccatcttctgtttcctttagttatatgacctttttggaggtaacaaactgcaatgggttgaaaaaattgataacacactcaacagcaaagagtcttg |
20777994 |
T |
|
| Q |
241 |
tcaaactc |
248 |
Q |
| |
|
|||||||| |
|
|
| T |
20777993 |
tcaaactc |
20777986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 44 - 276
Target Start/End: Complemental strand, 20840934 - 20840702
Alignment:
| Q |
44 |
gcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatcagtgttccagtctgacaatgttggtt |
143 |
Q |
| |
|
|||| ||| |||||| ||||||||| ||||||| ||||||||||||| ||| || |||||||| ||| |||||||||||||||||| |||||| ||| |
|
|
| T |
20840934 |
gcttcaatgtatatgcaaagaaggagttcaaattaacccagttctacattttgttaaaagcattcgggttcatcagtgttccagtctgataatgttagtt |
20840835 |
T |
|
| Q |
144 |
ccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttgataacacactcaacagcaaagagtcttgtca |
243 |
Q |
| |
|
||||| |||||| |||||||||| |||||| ||||| |||| ||||||| ||||||||||| |||||||||| || |||| |||||||||| ||| |||| |
|
|
| T |
20840834 |
ccatcctctgttacctttagttacatgacctatttggaggttacaaactacaatgggttgaaaaatttgatatcatactcgacagcaaagattctcgtca |
20840735 |
T |
|
| Q |
244 |
aactcacaacaatgacgattaaaatgtgtaatt |
276 |
Q |
| |
|
|| | |||||||||| ||||||||||||||||| |
|
|
| T |
20840734 |
aattgacaacaatgaagattaaaatgtgtaatt |
20840702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 310
Target Start/End: Original strand, 13553130 - 13553426
Alignment:
| Q |
14 |
cagagagttggaattatggcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| || ||||||||||||||| ||||| |
|
|
| T |
13553130 |
cagagagttggaattatggcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggatccttttctgcattttcttgaaagcattaatgtt |
13553229 |
T |
|
| Q |
114 |
tatcagtgttccagtctgacaatgttggttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttga |
213 |
Q |
| |
|
||| ||||||||||||||| || |||||||||||| |||| | |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13553230 |
tatgagtgttccagtctgataaagttggttccatcctctgctacctttagttacatgacctatttgaaggtaacaaactgcaatgggttgataaatttga |
13553329 |
T |
|
| Q |
214 |
taacacactcaacagcaaagagtcttgtcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
310 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
13553330 |
taacacactcaacagcaaatagtcttgtcaaactcacaacaatgaagattgaaatgtgtaattggcttttggatatagtgaacggtaaagaagatga |
13553426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 310
Target Start/End: Original strand, 13678027 - 13678323
Alignment:
| Q |
14 |
cagagagttggaattatggcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtt |
113 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||| || ||||||||||||||| ||||| |
|
|
| T |
13678027 |
cagagagttggaattattgcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggatccttttctgcattttcttgaaagcattgatgtt |
13678126 |
T |
|
| Q |
114 |
tatcagtgttccagtctgacaatgttggttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttga |
213 |
Q |
| |
|
| || ||||||||||||| || ||||||||| || |||||| |||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13678127 |
tgccaatgttccagtctgataaagttggttccgtcctctgttacctttagttacatgacctatttggaggtaacaaactgcaatgggttgataaatttga |
13678226 |
T |
|
| Q |
214 |
taacacactcaacagcaaagagtcttgtcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
13678227 |
taacacactcaacagcaaagagtcttgtcaaactcacaacaatgaagattgaaatgtgtaattggcttgaggatatagtgaatggtaaagaagatga |
13678323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 310
Target Start/End: Original strand, 20378471 - 20378761
Alignment:
| Q |
20 |
gttggaattatggcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatcag |
119 |
Q |
| |
|
||||||||| ||||| ||| ||||||| ||| |||||| |||||||||||||| |||||||| |||||||||||||||||||||||| |||||| |||| |
|
|
| T |
20378471 |
gttggaattgtggcaactgagcaagcttcaatgtatatgcaaagaaggatttcagatggaccccgttctacagtttcttgaaagcattgatgtttctcag |
20378570 |
T |
|
| Q |
120 |
tgttccagtctgacaatgttggttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttgataacac |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20378571 |
tgttccagtctgacaaagttggttccatcctctgttagctttagttatttgacctatttggaggtaacaaactgcaatgggttgataaatttgataacac |
20378670 |
T |
|
| Q |
220 |
actcaacagcaaagagtcttgtcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
310 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20378671 |
actcaacagccacgagtcttgtcaaactcacaacaatgaagattaaaatgtgtaattggcttgaggatatagtgaacggtaaagaagatga |
20378761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 25 - 310
Target Start/End: Complemental strand, 15895460 - 15895175
Alignment:
| Q |
25 |
aattatggcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatcagtgttc |
124 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||| ||||||| |||||||| |
|
|
| T |
15895460 |
aattatggcagttgcacaagcttaaatatatatgtaaagaaggatttcaaatggatccttttctacattttattgaaagcattgatgtttaccagtgttc |
15895361 |
T |
|
| Q |
125 |
cagtctgacaatgttggttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttgataacacactca |
224 |
Q |
| |
|
|||||||| || |||||||||||| || ||| |||||||||| |||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
15895360 |
cagtctgataaagttggttccatcctcagttacctttagttacatgacctatttggaggtaacaagctgcaatgggttgaaaaatttgataacacactca |
15895261 |
T |
|
| Q |
225 |
acagcaaagagtcttgtcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
310 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15895260 |
acagcaaagagtcttgtcaaactcataacaatgaagattacaatgtgtaattggcttgaggatatagtgaacggtaaagaagatga |
15895175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 310
Target Start/End: Original strand, 13596761 - 13597057
Alignment:
| Q |
14 |
cagagagttggaattatggcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtt |
113 |
Q |
| |
|
|||||||||||| |||||| | |||| |||||||||||||||||| |||||||||||||||||||| || |||| || ||||||||||||||| ||||| |
|
|
| T |
13596761 |
cagagagttggacttatgggacctgcccaagcttaaatatatatgcaaagaaggatttcaaatggatccttttctgcattttcttgaaagcattgatgtt |
13596860 |
T |
|
| Q |
114 |
tatcagtgttccagtctgacaatgttggttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttga |
213 |
Q |
| |
|
|| || ||||||||||||| || ||||||||| || |||||| |||||||||| |||||| ||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
13596861 |
taccaatgttccagtctgataaagttggttccgtcctctgttacctttagttacatgacctatttggaggtaacaagctgcaatgggttgataaatttga |
13596960 |
T |
|
| Q |
214 |
taacacactcaacagcaaagagtcttgtcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13596961 |
taacacactcaacagcaaagagtcttgtcaaactcacaacaatgaagattcaaaggtgttattggcttgaggatatagtgaacggtaaagaagatga |
13597057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 19188715 - 19188422
Alignment:
| Q |
19 |
agttggaattatggcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatca |
118 |
Q |
| |
|
||||| |||||||| | ||| ||||||| ||| |||||| ||||||||| || | || |||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
19188715 |
agttgaaattatggaacctggccaagcttcaatgtatatgcaaagaaggagtttagattgacccagttctacattttcttgaaagcatttgggtttatca |
19188616 |
T |
|
| Q |
119 |
gtgttccagtctgacaatgttggttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttgataaca |
218 |
Q |
| |
|
|||||||||||||| || |||||||||||| |||| | |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19188615 |
gtgttccagtctgataaagttggttccatcctctgctacctttagttacatgacctatttgaaggtaacaaactgcaatgggttgataaatttgataaca |
19188516 |
T |
|
| Q |
219 |
cactcaacagcaaagagtcttgtcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatgatg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||| |||| ||||||||||| ||||| |
|
|
| T |
19188515 |
cactcaacagcaaagagtcttgtcaaactcacaacaatgaagattgaaatgtgtaattggcttttggatatagtgagcggtaaagaagctgatg |
19188422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 32 - 310
Target Start/End: Original strand, 13517791 - 13518069
Alignment:
| Q |
32 |
gcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatcagtgttccagtctg |
131 |
Q |
| |
|
||||||||| |||||||||| |||||| |||||||||||||| || |||| ||||||||| | |||||||| || ||| ||||||||||| |||||| |
|
|
| T |
13517791 |
gcagctgcataagcttaaatgtatatgcaaagaaggatttcagataaaccccgttctacagatgcttgaaagtataattgtgtatcagtgttctagtctg |
13517890 |
T |
|
| Q |
132 |
acaatgttggttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttgataacacactcaacagcaa |
231 |
Q |
| |
|
| |||||| |||||||| |||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13517891 |
ataatgttagttccatcctctgttacctttagttatttgacctatttggaggtaacaaactgcaatgggttgaaaaatttgataacacactcaacagcaa |
13517990 |
T |
|
| Q |
232 |
agagtcttgtcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
310 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
13517991 |
agagtcttgtcaaactcacaacaatgaagattaaaatgtgtaattggcttgaggatatagtgaacagtaaagaagatga |
13518069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 53 - 310
Target Start/End: Complemental strand, 20510049 - 20509792
Alignment:
| Q |
53 |
tatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatcagtgttccagtctgacaatgttggttccatcttct |
152 |
Q |
| |
|
|||||| ||||||||| |||| || || ||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| |||||||| ||| |
|
|
| T |
20510049 |
tatatgcaaagaaggagttcagattgatccagttctacattttcttgaaagcatttgggtttatcagtgttccagtctgataatgttagttccatcatct |
20509950 |
T |
|
| Q |
153 |
gtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttgataacacactcaacagcaaagagtcttgtcaaactcacaa |
252 |
Q |
| |
|
||| |||||| ||| |||||| ||||| |||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20509949 |
gttacctttaattacatgacctatttggaggttacaaactgtaatgggttgaaaaatttgataacacactcaacagcaaagagtcttgtcaaactcacaa |
20509850 |
T |
|
| Q |
253 |
caatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
310 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
20509849 |
caatgaagattaaaatgtgtaattgtcttgaggatatagtgaacggtaaagaagatga |
20509792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 20 - 310
Target Start/End: Complemental strand, 16458719 - 16458429
Alignment:
| Q |
20 |
gttggaattatggcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatcag |
119 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||||||||| |||||||| ||| |||||||||| ||||||| ||| |||||| |||| |||| ||||| |
|
|
| T |
16458719 |
gttgaaattatggcagttgcacaagcttcaatatatatgcaaagaagggtttaaaatggaccccattctacattttattgaaatcattattgttcatcag |
16458620 |
T |
|
| Q |
120 |
tgttccagtctgacaatgttggttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttgataacac |
219 |
Q |
| |
|
||||||||||| | || |||||||||||| |||||| |||||| ||| ||||| ||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16458619 |
tgttccagtctaataaagttggttccatcatctgttacctttacttacctgacctatttggaggtggcaaactgcaatgggttgataaatttgataacat |
16458520 |
T |
|
| Q |
220 |
actcaacagcaaagagtcttgtcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||| |||||||||||||| |
|
|
| T |
16458519 |
actcaacagcaaagagtcttgtcaaactcacaacaatgaagattaaaatgtgtaatttgcttgaggatatagtgaatggtaaagaagatga |
16458429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 22 - 310
Target Start/End: Complemental strand, 16449141 - 16448853
Alignment:
| Q |
22 |
tggaattatggcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatcagtg |
121 |
Q |
| |
|
|||| ||| ||||| |||||| |||| |||||||||| |||||||| ||| |||||||||| ||||||| ||| ||||||||||| ||||| |||| || |
|
|
| T |
16449141 |
tggagttagggcagttgcacaggcttcaatatatatgcaaagaagggtttaaaatggaccccattctacattttattgaaagcattaatgttaatcactg |
16449042 |
T |
|
| Q |
122 |
ttccagtctgacaatgttggttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttgataacacac |
221 |
Q |
| |
|
||||||||| | || |||||||||||| |||||| |||||| ||| ||||| ||||| |||| |||| |||||||||||||||||||||||||||| || |
|
|
| T |
16449041 |
ttccagtctaataaagttggttccatcatctgttacctttacttacctgacctatttggaggtgacaagctgcaatgggttgataaatttgataacatac |
16448942 |
T |
|
| Q |
222 |
tcaacagcaaagagtcttgtcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||| |||||||||||||| |
|
|
| T |
16448941 |
tcaacagcaaagagtcttgtcaaactcacaacaatgaagattaaaatgtgtaatttgcttgaggatatagtgaatggtaaagaagatga |
16448853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 16484757 - 16484478
Alignment:
| Q |
14 |
cagagagttggaattatggcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtt |
113 |
Q |
| |
|
|||||||||| |||| ||| ||| |||||||| |||||||||| ||||||| |||| |||||||||| |||| || ||| |||||||||| ||||| |
|
|
| T |
16484757 |
cagagagttgacattagcgcatctggacaagcttcaatatatatgcaaagaagaattt-aaatggaccccattcttcattttattgaaagcataaatgtt |
16484659 |
T |
|
| Q |
114 |
tatcagtgttccagtctgacaatgttggttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttga |
213 |
Q |
| |
|
| || ||||||| ||||| ||||||||||||||| || ||| ||| |||| |||| |||| ||| |||||||||| ||||| ||||||| |
|
|
| T |
16484658 |
gagcattgttccaatctgataatgttggttccatcgtcagttacct----------gacctatttagaggtgacacactgcaatggattgatgaatttga |
16484569 |
T |
|
| Q |
214 |
taacacactcaacagcaaagagtcttgtcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaaga |
304 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| |||| |
|
|
| T |
16484568 |
taacatactcaacagcaaagagtcttgtcaaactcacaacaatgaagattaaaatgtgtaatttgcttgaggatatagtgaacggtgaaga |
16484478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 310
Target Start/End: Original strand, 211098 - 211393
Alignment:
| Q |
15 |
agagagttggaattatggcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgttt |
114 |
Q |
| |
|
||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||| || ||||||||| ||||| |||||| |
|
|
| T |
211098 |
agagagttggacttatgggagctgcccaagcttaaatatatatgtaaagaaggatttcaaatggatccttttctgcattttcttgaacgcattgatgttt |
211197 |
T |
|
| Q |
115 |
atcagtgttccagtctgacaatgttggttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttgat |
214 |
Q |
| |
|
| ||||||||||||||| || |||||||||||| |||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
211198 |
acgagtgttccagtctgataaagttggttccatcctctgttacctttagttacatgacctatttgaaggtaacaaactgcaatgggttgataaatttgat |
211297 |
T |
|
| Q |
215 |
aacacactcaacagcaaagagtcttgtcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
211298 |
aacacactcaacagcaaagagtcttgtcaaactcacaacaatgaagattaaaatgtgtaattggcttgaggatatagtgaacggtaaagaagatga |
211393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 310
Target Start/End: Original strand, 175609 - 175905
Alignment:
| Q |
14 |
cagagagttggaattatggcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtt |
113 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||| || ||||||||||||||| ||||| |
|
|
| T |
175609 |
cagagagttggaattattgcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggatccttttctgcattttcttgaaagcattgatgtt |
175708 |
T |
|
| Q |
114 |
tatcagtgttccagtctgacaatgttggttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttga |
213 |
Q |
| |
|
| || ||||||||||||| || ||||||||| || |||||| |||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
175709 |
tgccaatgttccagtctgataaagttggttccgtcctctgttacctttagttacatgacctatttggaggtaacaaactgcaatgggttgataaatttga |
175808 |
T |
|
| Q |
214 |
taacacactcaacagcaaagagtcttgtcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
175809 |
taacacactcaacagcaaagagtcttgtcaaactcacaacaatgaagattgaaatgtgtaattggcttgaggatatagtgaatggtaaagaagatga |
175905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 310
Target Start/End: Original strand, 191017 - 191313
Alignment:
| Q |
14 |
cagagagttggaattatggcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtt |
113 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||| || ||||||||||||||| ||||| |
|
|
| T |
191017 |
cagagagttggaattattgcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggatccttttctgcattttcttgaaagcattgatgtt |
191116 |
T |
|
| Q |
114 |
tatcagtgttccagtctgacaatgttggttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttga |
213 |
Q |
| |
|
| || ||||||||||||| || ||||||||| || |||||| |||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
191117 |
tgccaatgttccagtctgataaagttggttccgtcctctgttacctttagttacatgacctatttggaggtaacaaactgcaatgggttgataaatttga |
191216 |
T |
|
| Q |
214 |
taacacactcaacagcaaagagtcttgtcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
191217 |
taacacactcaacagcaaagagtcttgtcaaactcacaacaatgaagattgaaatgtgtaattggcttgaggatatagtgaatggtaaagaagatga |
191313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 310
Target Start/End: Original strand, 4046 - 4342
Alignment:
| Q |
14 |
cagagagttggaattatggcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtt |
113 |
Q |
| |
|
|||||||||||| |||||| | |||| |||||||||||||||||| |||||||||||||||||||| || |||| || ||||||||||||||| ||||| |
|
|
| T |
4046 |
cagagagttggacttatgggacctgcccaagcttaaatatatatgcaaagaaggatttcaaatggatccttttctgcattttcttgaaagcattgatgtt |
4145 |
T |
|
| Q |
114 |
tatcagtgttccagtctgacaatgttggttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttga |
213 |
Q |
| |
|
|| || ||||||||||||| || ||||||||| || |||||| |||||||||| |||||| ||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
4146 |
taccaatgttccagtctgataaagttggttccgtcctctgttacctttagttacatgacctatttggaggtaacaagctgcaatgggttgataaatttga |
4245 |
T |
|
| Q |
214 |
taacacactcaacagcaaagagtcttgtcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4246 |
taacacactcaacagcaaagagtcttgtcaaactcacaacaatgaagattcaaaggtgttattggcttgaggatatagtgaacggtaaagaagatga |
4342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 22273068 - 22272777
Alignment:
| Q |
19 |
agttggaattatggcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatca |
118 |
Q |
| |
|
||||| ||||| |||| ||| ||||||| ||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22273068 |
agttgaaattacggcacctgagcaagcttcaatgtatatgcaaagaaggatttcaaatggatccagttctacagtttcttgaaagcatttatgtttatca |
22272969 |
T |
|
| Q |
119 |
gtgttccagtctgacaatgttggttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttgataaca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22272968 |
gtgttccagtctgacaatgttggttccatcttctgttaccttttgttatatgacctttttggaggtaacaaactgcaatgggttgaataatttgataaca |
22272869 |
T |
|
| Q |
219 |
cactcaacagcaaagagtcttgtcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
22272868 |
cactcaacagcaaagagtcttgtcaaactcataacaatgaagattaaaatgtgtaattggcttgaggatatagtgaatggtaaagaagatga |
22272777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 15 - 310
Target Start/End: Original strand, 21817448 - 21817743
Alignment:
| Q |
15 |
agagagttggaattatggcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgttt |
114 |
Q |
| |
|
||||||||| |||||||| | ||| |||||| ||||||||| |||||||||||||||||||| || |||| || ||||||||||| ||| |||||| |
|
|
| T |
21817448 |
agagagttgaaattatggtacctggctaagcttcgatatatatgcaaagaaggatttcaaatggatccttttctgcattttcttgaaagaattgatgttt |
21817547 |
T |
|
| Q |
115 |
atcagtgttccagtctgacaatgttggttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttgat |
214 |
Q |
| |
|
| || ||||||||||||| || ||||||||| || || ||| |||||||||| |||||| ||||| ||||| || |||||||||||| || ||||||||| |
|
|
| T |
21817548 |
accaatgttccagtctgataaagttggttccgtcctcggttacctttagttacatgacctatttggaggtatcatactgcaatgggtcgaaaaatttgat |
21817647 |
T |
|
| Q |
215 |
aacacactcaacagcaaagagtcttgtcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21817648 |
aacacactcaacagcaaagagtcttgtcaaactcagaacaatgaagattcaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
21817743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 310
Target Start/End: Original strand, 48773 - 49063
Alignment:
| Q |
20 |
gttggaattatggcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatcag |
119 |
Q |
| |
|
||||||||| ||||| ||| ||||||| ||| |||||| |||||||||||||| |||||||| |||||||||||||||||||||||| |||||| |||| |
|
|
| T |
48773 |
gttggaattgtggcaactgagcaagcttcaatgtatatgcaaagaaggatttcagatggaccccgttctacagtttcttgaaagcattgatgtttctcag |
48872 |
T |
|
| Q |
120 |
tgttccagtctgacaatgttggttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttgataacac |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48873 |
tgttccagtctgacaaagttggttccatcctctgttagctttagttatttgacctatttggaggtaacaaactgcaatgggttgataaatttgataacac |
48972 |
T |
|
| Q |
220 |
actcaacagcaaagagtcttgtcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
310 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
48973 |
actcaacagccacgagtcttgtcaaactcacaacaatgaagattaaaatgtgtaattgacttgaggatatagtgaacggtaaagaagatga |
49063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 26 - 308
Target Start/End: Original strand, 43184 - 43466
Alignment:
| Q |
26 |
attatggcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatcagtgttcc |
125 |
Q |
| |
|
||||||||| ||| ||||||| ||| |||||| |||||||||||||| || |||||||||||||| || ||||||| ||||| ||| | ||| |||||| |
|
|
| T |
43184 |
attatggcacctgaccaagcttcaatgtatatgcaaagaaggatttcagatcgacccagttctacaattacttgaaaccatttgtgtgtctcaatgttcc |
43283 |
T |
|
| Q |
126 |
agtctgacaatgttggttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttgataacacactcaa |
225 |
Q |
| |
|
||| ||| || |||||||||||| || || |||||||||| |||||| |||||||||||||| |||||||||||||||| ||||| ||| |||| |||| |
|
|
| T |
43284 |
agtatgataaagttggttccatcctcagtcacctttagttacatgacctatttgaaggtaacatactgcaatgggttgatcaatttaatatcacattcaa |
43383 |
T |
|
| Q |
226 |
cagcaaagagtcttgtcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagat |
308 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43384 |
cagcgaagagtcttgtcaaactcacaacaatgaagattaaaatgtgtaattggcttgaggatatagtgaacggtaaagaagat |
43466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 183; Significance: 6e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 54 - 304
Target Start/End: Complemental strand, 38051991 - 38051741
Alignment:
| Q |
54 |
atatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatcagtgttccagtctgacaatgttggttccatcttctg |
153 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || | |
|
|
| T |
38051991 |
atatgcaaagaaggttttcaaatggacccagttctacagtttcttgaaagcatttatgtttatcagtgttccagtctgacaaatttggttccaccctcag |
38051892 |
T |
|
| Q |
154 |
tttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttgataacacactcaacagcaaagagtcttgtcaaactcacaac |
253 |
Q |
| |
|
|| |||||||||| ||||| ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38051891 |
ttacctttagttacgtgacctatttggaggtaacaaattgccatgggttgataaatttgataacacactcaacagcaaagagtcttgccaaactcacaac |
38051792 |
T |
|
| Q |
254 |
aatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaaga |
304 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38051791 |
aatgaagattaaaatgtgtaattggcttgaggatatagtgaacggtaaaga |
38051741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 38054245 - 38053955
Alignment:
| Q |
19 |
agttggaattatggcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttat-gtttatc |
117 |
Q |
| |
|
||||||| |||||||| ||| ||||||| ||| |||||| |||||||||||||| |||||||| ||| |||| ||||||||||| ||| || |||| | |
|
|
| T |
38054245 |
agttggacttatggcacctgagcaagcttcaatgtatatgcaaagaaggatttcagatggaccccgttttacattttcttgaaag-attaattgtttcta |
38054147 |
T |
|
| Q |
118 |
agtgttccagtctgacaatgttggttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttgataac |
217 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||| |||| ||||| |||||| |||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38054146 |
agtgttccagtctgacaaagttggttccatcctctgttaccttcagttacatgacctatttagaggtaacaaactgcaatgggttgaaaaatttgataac |
38054047 |
T |
|
| Q |
218 |
acactcaacagcaaagagtcttgtcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatg |
309 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38054046 |
acactcaacagcaaagagctttatcaaactcacaacaatgaagattaaaatgtgtaattggcttgaggatatagtgaacggtaaagaagatg |
38053955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 41 - 307
Target Start/End: Complemental strand, 30702081 - 30701815
Alignment:
| Q |
41 |
caagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatcagtgttccagtctgacaatgttg |
140 |
Q |
| |
|
||||||| ||| |||||| ||||||||||||||||| ||||| ||||| |||||||||||| || ||||| ||||||||||||||| | || |||| |
|
|
| T |
30702081 |
caagcttcaatgtatatgcaaagaaggatttcaaatagaccccattctagagtttcttgaaaaaataactgtttctcagtgttccagtctaataaagttg |
30701982 |
T |
|
| Q |
141 |
gttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttgataacacactcaacagcaaagagtcttg |
240 |
Q |
| |
|
||||| || | |||| ||||| |||| |||||| ||||| |||||||||||||||||| ||||| ||| |||||||||||| |||| ||||||||||||| |
|
|
| T |
30701981 |
gttccgtcctttgttgccttttgttacatgacctatttggaggtaacaaactgcaatgagttgaaaaaattgataacacacccaacggcaaagagtcttg |
30701882 |
T |
|
| Q |
241 |
tcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaaga |
307 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
30701881 |
tcaaactcacaacaatgaagattaaaatgtgtaattggcttgaggatgtagtgaacagtaaagaaga |
30701815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 14 - 310
Target Start/End: Original strand, 121132 - 121428
Alignment:
| Q |
14 |
cagagagttggaattatggcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtt |
113 |
Q |
| |
|
|||||||||| |||||||| | ||| |||||| ||||||||| |||||||||||||||||||| || |||| || ||||||||||| ||| ||||| |
|
|
| T |
121132 |
cagagagttgaaattatggtacctggctaagcttcgatatatatgcaaagaaggatttcaaatggatccttttctgcattttcttgaaagaattgatgtt |
121231 |
T |
|
| Q |
114 |
tatcagtgttccagtctgacaatgttggttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttga |
213 |
Q |
| |
|
|| | ||||||||||||| || |||||||||||| |||||| |||||||||| |||||| ||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
121232 |
taccgatgttccagtctgataaagttggttccatcctctgttacctttagttacatgacctatttgaaggtatcatactgcaatgggttgataaatttga |
121331 |
T |
|
| Q |
214 |
taacacactcaacagcaaagagtcttgtcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
310 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
121332 |
tgacacactcaacaacaaagagtcttgtcaaactcacaacaatgaagattaaaatgtgtaattggcttgaggatatagtgaacggtaaagaagatga |
121428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 26 - 310
Target Start/End: Complemental strand, 31879 - 31595
Alignment:
| Q |
26 |
attatggcagctgcacaagcttaaatatatatgtaaagaaggatttcaaatggacccagttctacagtttcttgaaagcatttatgtttatcagtgttcc |
125 |
Q |
| |
|
||||||||| ||| ||||||| ||| |||||| |||||||||||||| ||||||||||||||||| || ||||||| ||||| ||| ||||| |||||| |
|
|
| T |
31879 |
attatggcacctgaccaagcttcaatgtatatgcaaagaaggatttcagatggacccagttctacaattacttgaaaccatttgtgtgtatcaatgttcc |
31780 |
T |
|
| Q |
126 |
agtctgacaatgttggttccatcttctgtttcctttagttatatgaccgatttgaaggtaacaaactgcaatgggttgataaatttgataacacactcaa |
225 |
Q |
| |
|
||| ||| || |||||||||||| || || |||||||||| |||||||||||| ||||||||||||||||||||||||| ||||| ||| |||| |||| |
|
|
| T |
31779 |
agtatgataaagttggttccatcctcagtcacctttagttacatgaccgatttggaggtaacaaactgcaatgggttgatcaatttaatatcacattcaa |
31680 |
T |
|
| Q |
226 |
cagcaaagagtcttgtcaaactcacaacaatgacgattaaaatgtgtaattggcttgaggatattgtgaacggtaaagaagatga |
310 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31679 |
cagcgaagagtcttgtcaaactcacaacaatgaagattaaaatgtgtaattggcttgaggatatagtgaacggtaaagaagatga |
31595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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