View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_high_144 (Length: 325)

Name: NF20384_high_144
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_high_144
NF20384_high_144
[»] chr4 (5 HSPs)
chr4 (13-325)||(51387006-51387320)
chr4 (21-178)||(14527465-14527624)
chr4 (94-180)||(45393979-45394065)
chr4 (131-184)||(24666123-24666176)
chr4 (94-178)||(26354196-26354280)
[»] chr8 (4 HSPs)
chr8 (21-178)||(26847610-26847769)
chr8 (73-163)||(36182064-36182154)
chr8 (63-122)||(42663931-42663990)
chr8 (97-178)||(4402254-4402335)
[»] chr5 (6 HSPs)
chr5 (13-176)||(23257850-23258013)
chr5 (74-180)||(39937851-39937956)
chr5 (129-176)||(16194354-16194401)
chr5 (48-122)||(23925722-23925796)
chr5 (62-112)||(24566131-24566181)
chr5 (62-112)||(24607167-24607217)
[»] chr7 (7 HSPs)
chr7 (62-165)||(36611670-36611773)
chr7 (73-187)||(17114136-17114250)
chr7 (73-165)||(17114789-17114881)
chr7 (94-178)||(30581230-30581314)
chr7 (94-157)||(43659760-43659823)
chr7 (74-148)||(48135927-48136000)
chr7 (102-178)||(34808961-34809037)
[»] chr1 (4 HSPs)
chr1 (64-182)||(27746093-27746210)
chr1 (63-178)||(2261477-2261591)
chr1 (62-118)||(28924644-28924700)
chr1 (102-176)||(1099893-1099967)
[»] chr2 (2 HSPs)
chr2 (94-178)||(20606885-20606969)
chr2 (73-149)||(18544142-18544217)
[»] chr3 (3 HSPs)
chr3 (63-165)||(9830585-9830686)
chr3 (63-178)||(15288221-15288335)
chr3 (130-178)||(53242666-53242714)
[»] chr6 (1 HSPs)
chr6 (62-107)||(16718336-16718381)


Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 325
Target Start/End: Original strand, 51387006 - 51387320
Alignment:
Q  13 agcataggggcaagagacgagagggaggagaaaaga--gagaggtgcaatatagtgtatatggtgtataataagatatgtgtacttgattaatctaatga 110  Q
    |||| |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51387006 agcaaaggggcaagagacgagagggagaagaaaagaaagagaggtgcaatatagtgtatatggtgtataataagatatgtgtacttgattaatctaatga 51387105  T
Q  111 ctcttaattattattcatagtggttcatcgatgagggacgtaattgatccctcactctataatccaccattatttataatttttattgataaatatgtcc 210  Q
    || ||||||||||||| |||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  51387106 cttttaattattattcgtagtggttcaccggtgagggacgtaattgatccctcaccctataatccaccattatttataatttttactgataaatatgtcc 51387205  T
Q  211 ttttgatatccattttatcacttctctataatctgttatgaaaatgattggattggtgcgcatttaaaaagattgcggaacataagtatattgtacacaa 310  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||    
T  51387206 ttttgatatccattttatcacttctctatagtctgttatgaaaatgattggattggtgcacatttaaaaagattgtggaacataggtatattgtacacaa 51387305  T
Q  311 agtaacaagtatcat 325  Q
     ||||||||||||||    
T  51387306 ggtaacaagtatcat 51387320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 14527465 - 14527624
Alignment:
Q  21 ggcaagagacgagagggaggagaaaaga--gagaggtgcaatatagtgtatatggtgtataataagatatgtgtacttgattaatctaatgactcttaat 118  Q
    ||||||| ||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14527465 ggcaagacacgagagggagaagaaaagaaagagaggtgcaatatagtgtatatggtgtataataagatatatgtacttgattaatctaatgactcttaat 14527564  T
Q  119 tattattcatagtggttcatcgatgagggacgtaattgatccctcactctataatccacc 178  Q
    ||||||||||||||||||| || |||||||| ||||||||||||||| ||| ||||||||    
T  14527565 tattattcatagtggttcaccggtgagggacttaattgatccctcaccctagaatccacc 14527624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 45394065 - 45393979
Alignment:
Q  94 cttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctcactctataatccaccat 180  Q
    ||||||| |||||||| |||| ||||||| || ||||||||||| || | || ||| ||||||| ||||||||||| ||| ||||||    
T  45394065 cttgattgatctaatggctctcaattattgttaatagtggttcaccggtaagagacttaattgaaccctcactctagaattcaccat 45393979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 24666176 - 24666123
Alignment:
Q  131 tggttcatcgatgagggacgtaattgatccctcactctataatccaccattatt 184  Q
    ||||||| || |||||||| ||||||||||||||| ||| ||||||||||||||    
T  24666176 tggttcaccggtgagggacttaattgatccctcaccctagaatccaccattatt 24666123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 26354196 - 26354280
Alignment:
Q  94 cttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctcactctataatccacc 178  Q
    |||||||||| |||||||||||||| ||| ||||| ||||| || |  |||||||| ||||||| ||||||| ||| || |||||    
T  26354196 cttgattaatttaatgactcttaataattgttcatggtggtccacctgtgagggacttaattgaaccctcaccctagaacccacc 26354280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 8e-55; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 26847610 - 26847769
Alignment:
Q  21 ggcaagagacgagagggaggagaaaaga--gagaggtgcaatatagtgtatatggtgtataataagatatgtgtacttgattaatctaatgactcttaat 118  Q
    ||||||||||||||||||| ||||||||  |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  26847610 ggcaagagacgagagggagaagaaaagaaagagaggtgcaatatagtgtatatggtatataataagctatgtgtacttgattaatctaatgactcttaat 26847709  T
Q  119 tattattcatagtggttcatcgatgagggacgtaattgatccctcactctataatccacc 178  Q
    ||||||||||||||||||| || ||||| || ||||||||||||||  ||| ||||||||    
T  26847710 tattattcatagtggttcaccggtgaggaacttaattgatccctcatcctagaatccacc 26847769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 163
Target Start/End: Original strand, 36182064 - 36182154
Alignment:
Q  73 gtgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctc 163  Q
    |||||||||||| | ||||  ||||||||||||||||||||| | | ||| || || |||||||| || |||||||| ||||||| |||||    
T  36182064 gtgtataataaggtgtgtgatcttgattaatctaatgactctcagtaattgtttatggtggttcaccggtgagggacttaattgaaccctc 36182154  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 42663931 - 42663990
Alignment:
Q  63 agtgtatatggtgtataataagatatgtgtacttgattaatctaatgactcttaattatt 122  Q
    ||||||||  |||||||||||||  | |||| |||||||||| |||||||||||||||||    
T  42663931 agtgtatacagtgtataataagaattatgtatttgattaatcaaatgactcttaattatt 42663990  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 4402254 - 4402335
Alignment:
Q  97 gattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctcactctataatccacc 178  Q
    ||||||||||||| |||||  || || |||| ||||||||| || |||||||| |||| || ||||||| ||| ||||||||    
T  4402254 gattaatctaatggctcttgtttgttgttcaaagtggttcaccggtgagggacttaatagaaccctcaccctagaatccacc 4402335  T

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Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 23257850 - 23258013
Alignment:
Q  13 agcataggggcaagagacgagagggaggagaaaaga--gagaggtgcaatatagtgtatatggtgtataataagatatgtgtacttgattaatctaatga 110  Q
    |||| |||||||||| ||||||| ||| ||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23257850 agcaaaggggcaagacacgagagagagaagaaaagaaagagaggtgcaatatagtgtatatcgtgtataataagatatgtgtacttgattaatctaatga 23257949  T
Q  111 ctcttaattattattcatagtggttcatcgatgagggacgtaattgatccctcactctataatcca 176  Q
    || |||||||||||||| |  |||||| |  |||| ||  ||||||||||||||| ||| ||||||    
T  23257950 cttttaattattattcaca--ggttcaccagtgagagatttaattgatccctcaccctaaaatcca 23258013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 180
Target Start/End: Original strand, 39937851 - 39937956
Alignment:
Q  74 tgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctcactctataat 173  Q
    ||||||||||||||| || | ||  ||||||||||| ||||| ||| |||||||| ||||| || || |||||||| ||| ||| ||||||| ||| |||    
T  39937851 tgtataataagatatatgaatttagttaatctaatggctctt-attgttattcatggtggtccaccggtgagggacttaactgaaccctcaccctagaat 39937949  T
Q  174 ccaccat 180  Q
    |||||||    
T  39937950 ccaccat 39937956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 16194401 - 16194354
Alignment:
Q  129 agtggttcatcgatgagggacgtaattgatccctcactctataatcca 176  Q
    |||||||||  ||||| |||| ||||||||||||||||||||||||||    
T  16194401 agtggttcactgatgatggacttaattgatccctcactctataatcca 16194354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 23925796 - 23925722
Alignment:
Q  48 agagaggtgcaatatagtgtatatggtgtataataagatatgtgtacttgattaatctaatgactcttaattatt 122  Q
    ||||||||  ||| |||||||||   |||||||||| || |||||  || |||||||||||||||||||||||||    
T  23925796 agagaggtataatttagtgtatacaatgtataataaaatttgtgtttttaattaatctaatgactcttaattatt 23925722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 24566131 - 24566181
Alignment:
Q  62 tagtgtatatggtgtataataagatatgtgtacttgattaatctaatgact 112  Q
    ||||| ||| |||||||||||| ||||||| ||||||||||||||| ||||    
T  24566131 tagtgcatacggtgtataataaaatatgtgcacttgattaatctaacgact 24566181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 24607167 - 24607217
Alignment:
Q  62 tagtgtatatggtgtataataagatatgtgtacttgattaatctaatgact 112  Q
    ||||| ||| |||||||||||| ||||||| ||||||||||||||| ||||    
T  24607167 tagtgcatacggtgtataataaaatatgtgcacttgattaatctaacgact 24607217  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 165
Target Start/End: Original strand, 36611670 - 36611773
Alignment:
Q  62 tagtgtatatggtgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccc 161  Q
    ||||| ||| |||||||||||| ||||||| ||||||||||||||| || |||||||| || || | |||||||||  |||||||||| ||||||| |||    
T  36611670 tagtgcatacggtgtataataaaatatgtgcacttgattaatctaacgattcttaattgttgtttacagtggttcactgatgagggacttaattgaaccc 36611769  T
Q  162 tcac 165  Q
    ||||    
T  36611770 tcac 36611773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 187
Target Start/End: Complemental strand, 17114250 - 17114136
Alignment:
Q  73 gtgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctcactctataa 172  Q
    |||||||||||| | |||   ||||||||||||||||| | | | | ||| ||||| ||| |||| ||||||||||| ||||||| ||||||| ||| ||    
T  17114250 gtgtataataaggtgtgtaatcttgattaatctaatgattatcagtaattgttcatggtgattcaccgatgagggacttaattgaaccctcaccctagaa 17114151  T
Q  173 tccaccattatttat 187  Q
    ||||||||| |||||    
T  17114150 tccaccattttttat 17114136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 73 - 165
Target Start/End: Original strand, 17114789 - 17114881
Alignment:
Q  73 gtgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctcac 165  Q
    |||||||||||| | ||||  ||||||||||||||||||||| | | ||| ||||| |||||||| || ||||| || ||||||| |||||||    
T  17114789 gtgtataataagttgtgtgatcttgattaatctaatgactctcagtaattgttcatggtggttcaccggtgaggaacttaattgaaccctcac 17114881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 30581230 - 30581314
Alignment:
Q  94 cttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctcactctataatccacc 178  Q
    ||||||| |||||||| |||||||||||| || |||||||||||  | |||||||| ||||||| ||||||| ||| ||| ||||    
T  30581230 cttgattgatctaatggctcttaattattgtttatagtggttcactggtgagggacttaattgaaccctcaccctagaattcacc 30581314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 43659823 - 43659760
Alignment:
Q  94 cttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattga 157  Q
    ||||||| ||||||| ||||||||||||  || || ||||||||||||||| |||| |||||||    
T  43659823 cttgattgatctaataactcttaattatagtttatggtggttcatcgatgatggacttaattga 43659760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 48136000 - 48135927
Alignment:
Q  74 tgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgaggga 148  Q
    |||| |||| |||||||| |||||||||||||||||| |||||||| || || |||||| | ||||| |||||||    
T  48136000 tgtagaataggatatgtggacttgattaatctaatga-tcttaattgttgtttatagtgatgcatcggtgaggga 48135927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 34808961 - 34809037
Alignment:
Q  102 atctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctcactctataatccacc 178  Q
    |||||||||||  |||||||  || | |||||| || |||||| |||| ||||||| ||||||||||| ||||||||    
T  34808961 atctaatgactaataattatcttttaaagtggtacaccgatgaaggacttaattgaaccctcactctagaatccacc 34809037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 182
Target Start/End: Original strand, 27746093 - 27746210
Alignment:
Q  64 gtgtatatggtgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctc 163  Q
    ||||||||||||||||||||||||| || |||  |||||||||||| ||||| ||| |||||||  ||| | ||  | |||||||| ||||||| |||||    
T  27746093 gtgtatatggtgtataataagatatatgaactcaattaatctaatggctctt-attgttattcacggtgatccactggtgagggacttaattgaaccctc 27746191  T
Q  164 actctataatccaccatta 182  Q
    || ||| ||||||||||||    
T  27746192 acgctagaatccaccatta 27746210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 178
Target Start/End: Original strand, 2261477 - 2261591
Alignment:
Q  63 agtgtatatggtgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccct 162  Q
    |||||||||| | ||||||||||||| || |||  |||||||||||| ||||| ||| |||||||| ||||||||  | |||||| | ||||||| ||||    
T  2261477 agtgtatatgatatataataagatatatgaactcaattaatctaatggctctt-attgttattcatggtggttcactggtgaggggcttaattgaaccct 2261575  T
Q  163 cactctataatccacc 178  Q
    ||| ||| ||| ||||    
T  2261576 caccctaaaattcacc 2261591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 28924700 - 28924644
Alignment:
Q  62 tagtgtatatggtgtataataagatatgtgtacttgattaatctaatgactcttaat 118  Q
    |||||||| || | ||||||||||||||||   ||||||||||||||||||||||||    
T  28924700 tagtgtatgtgatttataataagatatgtgagtttgattaatctaatgactcttaat 28924644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 1099967 - 1099893
Alignment:
Q  102 atctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctcactctataatcca 176  Q
    |||||||| |||| ||| |||||||| |||||||||||| |||||||| |||| || | ||||| ||| ||||||    
T  1099967 atctaatggctctcaataattattcagagtggttcatcggtgagggacttaatagaactctcaccctagaatcca 1099893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 20606885 - 20606969
Alignment:
Q  94 cttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctcactctataatccacc 178  Q
    ||||||| |||||||| |||||||||||| || ||||||||||| || |||||||| ||||||| ||||||| ||| ||| ||||    
T  20606885 cttgattgatctaatggctcttaattattgtttatagtggttcaccggtgagggacttaattgaaccctcaccctagaattcacc 20606969  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 18544142 - 18544217
Alignment:
Q  73 gtgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggac 149  Q
    |||||||||||||||| || |||  |||||||||||  ||||||||| |||||||| ||||| || || ||||||||    
T  18544142 gtgtataataagatatatgaactcaattaatctaatagctcttaatt-ttattcatggtggtccaccggtgagggac 18544217  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 165
Target Start/End: Complemental strand, 9830686 - 9830585
Alignment:
Q  63 agtgtatatggtgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccct 162  Q
    ||||||||  |||||||||||||  |||||| |||||||||| ||||||||||||||||| || | | |||| || || |||||||| ||||||| ||||    
T  9830686 agtgtatacagtgtataataagaattgtgtatttgattaatcaaatgactcttaattattgttaaga-tggtccaccggtgagggacttaattgaaccct 9830588  T
Q  163 cac 165  Q
    |||    
T  9830587 cac 9830585  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 178
Target Start/End: Original strand, 15288221 - 15288335
Alignment:
Q  63 agtgtatatggtgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccct 162  Q
    ||||||||  |||||||||||||  |||||| |||||||||| ||||||||||||||||  || | | |||||||||| ||||| || |||||||  |||    
T  15288221 agtgtatacagtgtataataagaattgtgtatttgattaatcaaatgactcttaattatagttaaga-tggttcatcggtgaggaacttaattgaatcct 15288319  T
Q  163 cactctataatccacc 178  Q
    ||| ||| ||| ||||    
T  15288320 caccctagaattcacc 15288335  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 53242714 - 53242666
Alignment:
Q  130 gtggttcatcgatgagggacgtaattgatccctcactctataatccacc 178  Q
    ||||| || ||||||||||| |||||||| |||||| ||||||||||||    
T  53242714 gtggtccaccgatgagggacttaattgattcctcaccctataatccacc 53242666  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 16718381 - 16718336
Alignment:
Q  62 tagtgtatatggtgtataataagatatgtgtacttgattaatctaa 107  Q
    ||||| ||| |||||||||||| |||||||| ||||||||||||||    
T  16718381 tagtgcataaggtgtataataaaatatgtgtgcttgattaatctaa 16718336  T

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