View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_145 (Length: 324)
Name: NF20384_high_145
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_145 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 38 - 262
Target Start/End: Original strand, 9503219 - 9503444
Alignment:
| Q |
38 |
taattaaaagattaaattttgtccttgaaattgaataagtctcaattttaaagaaaatcaaattataagcggtacatattactcattacaagtatcacat |
137 |
Q |
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| T |
9503219 |
taattaaaagattaaattttgtccttgaaattgaataagtctctattttaaaggaaatcaaattataagcagtacatattattcatcacaagtattacat |
9503318 |
T |
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| Q |
138 |
gtctagtcaataatcacacgaggatactcatcaaattagttaatagttatgtaaatgtccattacagt-ggaggatatgtgggggcatgactcatgagta |
236 |
Q |
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| T |
9503319 |
gtctagtcaataatcatacgaggatactcatcaaattagttaatagttatgtaaatgtccattatagtgggaggatatgtgggggcatgactcatgagta |
9503418 |
T |
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| Q |
237 |
cagtttagttagttttaacttctgaa |
262 |
Q |
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|| |||||||||||||| ||||||| |
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| T |
9503419 |
caatttagttagttttagtttctgaa |
9503444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 9503466 - 9503515
Alignment:
| Q |
256 |
ttctgaaatacaatttctgaagtatagctcacaaagccattaaagctaag |
305 |
Q |
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||||||| |||| |||||||||| ||||||||||||||||||||||||| |
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| T |
9503466 |
ttctgaagtacatcttctgaagtacagctcacaaagccattaaagctaag |
9503515 |
T |
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