View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_150 (Length: 320)
Name: NF20384_high_150
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_150 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 28464439 - 28464743
Alignment:
| Q |
1 |
tgtattatatgcagcttaaaatcattggatcaaggtgtgagtgtgagtgttggtgagtcacttacagctggcaatgggacaacccgatggctctctcctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28464439 |
tgtattatatgcagcttaaaatcattggatcaaggggtgagtgtcagtgttggtgagtcacttacagctggcaatgggacaacccgatggctctctcctt |
28464538 |
T |
|
| Q |
101 |
caagagattttgcatttgggttttaccaacttcctaatgcacttttcatgctagctatttggtatgacaagatacaaaatgatgccatcatttggtatgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28464539 |
caagagattttgcatttgggttttaccaacttcctaatgcacttttcttgctagctatttggtatgacaagatacaaaatgatgccatcatttggtatgc |
28464638 |
T |
|
| Q |
201 |
aaatggagacaaccctgcacccaagggatcaagattggtattaaatgattttcaaggtttggttctcaccaaccctcaaggtttagagttatggagatca |
300 |
Q |
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| T |
28464639 |
aaatggagacaaccctgcacccaagggatcaagattggtattaaatgattttcaaggtttggttctcaccaaccctcaaggtttagagttatggagatca |
28464738 |
T |
|
| Q |
301 |
gattt |
305 |
Q |
| |
|
||||| |
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|
| T |
28464739 |
gattt |
28464743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 306
Target Start/End: Original strand, 28486220 - 28486517
Alignment:
| Q |
8 |
tatgcagcttaaaatcattggatcaaggtgtgagtgtgagtgttggtgagtcacttacagctggcaatgggacaacccgatggctctctccttcaagaga |
107 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| ||||||||| |||||||| |||| |
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| T |
28486220 |
tatgcagcttagaatcattggatcaaggtgtgagtgtgagtgttggtgagtcacttactgctggaaatgagacaacacgatggctcactccttcaggaga |
28486319 |
T |
|
| Q |
108 |
ttttgcatttgggttttaccaacttcctaatgcacttttcatgctagctatttggtatgacaagatacaaaatgatgccatcatttggtatgcaaatgga |
207 |
Q |
| |
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|||||||||||| ||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
28486320 |
ttttgcatttggattttaccaacttcctgatgatcttttcttgctagctatatggtatgacaagatacaagatgataccatcatttggtatgcaaatgga |
28486419 |
T |
|
| Q |
208 |
gacaaccctgcacccaagggatcaagattggtattaaatgattttcaaggtttggttctcaccaaccctcaaggtttagagttatggagatcagatttt |
306 |
Q |
| |
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|||| ||||| | |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
28486420 |
aacaaacctgc-tctaagggatcaagattggtattaaatgattctcgtggtttggttctcaccaaccctcaaggtttacagttatggagatccgatttt |
28486517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 28443603 - 28443894
Alignment:
| Q |
8 |
tatgcagcttaaaatcattggatcaaggtgtgagtgtgagtgttggtgagtcacttacagctggcaatgggacaacccgatggctctctccttcaagaga |
107 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | ||| |||||||||||||| ||||||| ||| ||||| || ||| ||||||||||| |||| |
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| T |
28443603 |
tatgcagcttagaatcattggatcaaggtgtaattgt------tggtgagtcacttattgctggcagtggcacaactcgttggttctctccttcaggaga |
28443696 |
T |
|
| Q |
108 |
ttttgcatttgggttttaccaacttcctaatgcacttttcatgctagctatttggtatgacaagatacaaaatgatgccatcatttggtatgcaaatgga |
207 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||| |||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28443697 |
tttttcatttggattttaccaacttcctaatgagcttttcttgctagctatatggtatgacaagatacaagatgatgccatcatttggtatgcaaatgga |
28443796 |
T |
|
| Q |
208 |
gacaaccctgcacccaagggatcaagattggtattaaatgattttcaaggtttggttctcaccaaccctcaaggtttagagttatggagatcagattt |
305 |
Q |
| |
|
|||||||||| || ||||||||||||||| |||||||||||| ||| |||||||| || ||||||||||||||||||||||||||||| |||||||| |
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| T |
28443797 |
aacaaccctgctcctaagggatcaagattgatattaaatgattctcatggtttggtgctgaccaaccctcaaggtttagagttatggagttcagattt |
28443894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 40 - 300
Target Start/End: Original strand, 28436396 - 28436656
Alignment:
| Q |
40 |
agtgtgagtgttggtgagtcacttacagctggcaatgggacaacccgatggctctctccttcaagagattttgcatttgggttttaccaacttcctaatg |
139 |
Q |
| |
|
||||||||| | ||||| ||||| || ||||| ||||||||||| || |||||||||||||| ||||||| |||||||| |||||||||||||| ||| |
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| T |
28436396 |
agtgtgagtctaggtgactcactcactgctggaaatgggacaactcgttggctctctccttcgggagatttcgcatttggattttaccaacttccaaatc |
28436495 |
T |
|
| Q |
140 |
cacttttcatgctagctatttggtatgacaagatacaaaatgatgccatcatttggtatgcaaatggagacaaccctgcacccaagggatcaagattggt |
239 |
Q |
| |
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|||||| |||||||||| ||||||| ||| ||||||| |||| |||||||||||||||||||||| |||||||||| || |||||||||| |||||| |
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| T |
28436496 |
agcttttcttgctagctatatggtatgtcaaaatacaaactgattccatcatttggtatgcaaatggtgacaaccctgttcctaagggatcaacattggt |
28436595 |
T |
|
| Q |
240 |
attaaatgattttcaaggtttggttctcaccaaccctcaaggtttagagttatggagatca |
300 |
Q |
| |
|
||||||||||| ||| || ||| | |||||||||||||||||||||||| ||||||||||| |
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|
| T |
28436596 |
attaaatgattctcatgggttgatgctcaccaaccctcaaggtttagagctatggagatca |
28436656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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