View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_151 (Length: 318)
Name: NF20384_high_151
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_151 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 302
Target Start/End: Complemental strand, 29908942 - 29908650
Alignment:
| Q |
10 |
attatactttagttagttatcttgttgcataaaagtatgaatgacaataaataactcaagtacacattttagaatcgtacacaaaacgcattgaacaaaa |
109 |
Q |
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| T |
29908942 |
attatactttagttagttatcttgttacataaaagtatgaatgacaataaataactcaagtacacattttaggatcgtacacaaaacgcattcaacaaaa |
29908843 |
T |
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| Q |
110 |
cacaccatgtgacgtactcaacgatttcaatttaaacatgcatatttgttgtccaaaactttgcaaaaatatatccctagactaaggtcgaggtgcatca |
209 |
Q |
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| T |
29908842 |
cacaccatgtgacgtactcaacgatttcaatttaaacatgcatatttgttgtccaaaactttgcaaaaatatatccctagactaaggtcgaggtgcatca |
29908743 |
T |
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| Q |
210 |
acaatctatctctatagatcttgatttgtaactatttagaaaacctcgtctaagtttcttactaataatcaactatctatcatgtcttacatg |
302 |
Q |
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| T |
29908742 |
acagtctatctctatagatcttaatttgtaactatttagaaaacctcgtctaagtttctcactaataatcaattacctatcatgtcttacatg |
29908650 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 35810217 - 35810178
Alignment:
| Q |
196 |
gtcgaggtgcatcaacaatctatctctatagatcttgatt |
235 |
Q |
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| T |
35810217 |
gtcgaagtgcatcaacaatctatctctatagatcttgatt |
35810178 |
T |
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