View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_162 (Length: 301)
Name: NF20384_high_162
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_162 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 29206950 - 29207220
Alignment:
| Q |
18 |
aaaaaccacattcatcaataaatgaaaattataatactatgttggacattgataattcactatatatcttacttcatagttgaacattgcacgtttgaca |
117 |
Q |
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| T |
29206950 |
aaaaaccacattcatcaataaatgaaaattataatactatgttggacattgataattcactatatatcttacttcatagttgaacattgcacgtttgaca |
29207049 |
T |
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| Q |
118 |
gctctttcttgtgtgtggagtttgaattcttgtggttttgtattttcttttgtaggagattttcttgaaccctaaacaaacacaaaaatgattcaccgaa |
217 |
Q |
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| T |
29207050 |
gctctttcttgtgtgtggagtttgaattcttgtggttttgtattttcttttgtaggagattttcttgaaccctaaacaaacacaaaaatgattcaccgaa |
29207149 |
T |
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| Q |
218 |
atgtgaaaaatgaaatggacatacaaagtagtaatacatgttagtgtaccatgtaattccttaccttattc |
288 |
Q |
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| T |
29207150 |
atgtgaaaaatgaaatggacatactaagtagtaatacatgttagtgtaccatgtaattccttaccttattc |
29207220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 80 - 206
Target Start/End: Complemental strand, 38379175 - 38379049
Alignment:
| Q |
80 |
tatatcttacttcatagttgaacattgcacgtttgacagctctttcttgtgtgtggagtttgaattcttgtggttttgtattttcttttgtaggagattt |
179 |
Q |
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||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| |||| | ||||||||||| ||||||||||| |
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| T |
38379175 |
tatatcttacttcgtagttgaatattgcacgtttgactgctctttcttgagtgtggagtttgaattcttttggtctagtattttctttggtaggagattt |
38379076 |
T |
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| Q |
180 |
tcttgaaccctaaacaaacacaaaaat |
206 |
Q |
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| T |
38379075 |
tcttgaagcctgaacaaacagaaaaat |
38379049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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