View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_169 (Length: 287)
Name: NF20384_high_169
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_169 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 6793069 - 6793329
Alignment:
| Q |
13 |
aatatcgtggcataaatccattggcttagattgaacttccgcgaacatacggcggatctcatcggagttgcctttgatcagacagtaggaaggacccctt |
112 |
Q |
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| T |
6793069 |
aatatcgtggcataaatccattggcttagattgaacttccgcaaacatacggcggatctcatcggagttgcctttgatcagacagtaggaaggacccctt |
6793168 |
T |
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| Q |
113 |
atgccttgtttgtgaaagtgacgtgaaatgacccatggtagcaaaattattgagtatgtgatccttgctatgaacactagcagtagaataaagattaaca |
212 |
Q |
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| T |
6793169 |
atgccttgtttgtgaaagtgacgtgaaatgatccatggtagcaaaattattgagtatgtgatccttgctatgaacactagcagtagaataaagattaaca |
6793268 |
T |
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| Q |
213 |
tgagtagaagaagatgagacatgaagttgataagttttgacaacctataaaaatgtagaaattg |
276 |
Q |
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| T |
6793269 |
tgagt---agaagatgagacatgaaattgataagttttgacaacctataaaaatgtagaaattg |
6793329 |
T |
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