View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_177 (Length: 282)
Name: NF20384_high_177
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_177 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 17180298 - 17180064
Alignment:
| Q |
15 |
cttaaggtagtgggttcaactcccaccgtcatcatgagaatttcttagacgactgatatgtatatatttttgttagctttcgctgagccttgaggcttgt |
114 |
Q |
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| T |
17180298 |
cttaaggtagtgggttcaactcccaccatcagcatgagaattttttaga-------tatgtatatatttttgttagctttcgctaagccttgaggctttt |
17180206 |
T |
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| Q |
115 |
tcgagcccaaataagtctttggagcctaactcacgtaacnnnnnnngtatatatnnnnnnnnnnntcgaagcagagttctttgataactaccaactctag |
214 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||| || |||||||||||||||||||||||||||||||| |
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| T |
17180205 |
tcgagcccaaataagtctttggagcctaactcacataactttttttgtatataaaaaaaaaaaaatcaaagcagagttctttgataactaccaactctag |
17180106 |
T |
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| Q |
215 |
tttctcaacaagacttaaaccagaagaatattcaactaaaga |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
17180105 |
tttctcaacaagacttaaaccagaagaatattcaactaaaga |
17180064 |
T |
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