View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_182 (Length: 278)
Name: NF20384_high_182
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_182 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 2 - 278
Target Start/End: Complemental strand, 1426071 - 1425795
Alignment:
| Q |
2 |
gagatggacatcatcaaacccatggatgggtggttgaactagacgaatgcctcgtgtgttttgtgtgattcgaaagtaccgttcatgttgaaagaannnn |
101 |
Q |
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| T |
1426071 |
gagatgtaaatcatcaaacccatggatgggtggttgaactagacgaatgcctcgtgtgttttgtgtgattcgaaagtaccgttcacgttgaaagaatttt |
1425972 |
T |
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| Q |
102 |
nnnatcgaacatcaataaagctgatgatgtttggtggtaaacaatcagcacaaacataaattaagcatagtagatatgaggaagttgtgttcgatttata |
201 |
Q |
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| T |
1425971 |
tttatcgaacatcaataaagctgatgatgtttggtggtaaacaaccagcaaaaacataaattaagcatagtagatatgaggacgttgtgttggatgtata |
1425872 |
T |
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| Q |
202 |
gtaagattagacgggatagaattagagctaacatgaacataaatttatgggacaataatacttgggtttacttggtg |
278 |
Q |
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| T |
1425871 |
gtaagattagacggaatagaattagagctaacatgaacataaatttatgggacaataatacttgggtttacttggtg |
1425795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 278
Target Start/End: Complemental strand, 1448161 - 1447886
Alignment:
| Q |
2 |
gagatggacatcatcaaacccatggatgggtggttgaactagacgaatgcctcgtgtgttttgtgtgattcgaaagtaccgttca--tgttgaaagaann |
99 |
Q |
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| T |
1448161 |
gagatgtaaatcatcaaacct-tgcatgggtggttgaaatggaggaatgcctcgtgtgttttatgtgatgcgaaagtactactcacgtgttgaaataaat |
1448063 |
T |
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| Q |
100 |
nnnnnatcgaacatcaataaagctgatgatgtttggtggtaaacaatcagcacaaacataaattaagcatagtagatatgaggaagttgtgttcgattta |
199 |
Q |
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| T |
1448062 |
tttt-atcgaacatcaataaaactgatgatgtttggtggtaaacaaccaacacaaacataaattaagcataatagatatgaagaagttgtgttggatgtg |
1447964 |
T |
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| Q |
200 |
tagtaagattagacgggatagaattagagctaacatgaacataaatttatgggacaataatacttgggtttacttggtg |
278 |
Q |
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| T |
1447963 |
tagtaagactagaggggataaaattagagctaac-tgaacataaatttatgggacaatactacttaggtttacttggtg |
1447886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 127 - 275
Target Start/End: Complemental strand, 1470512 - 1470364
Alignment:
| Q |
127 |
gatgtttggtggtaaacaatcagcacaaacataaattaagcatagtagatatgaggaagttgtgttcgatttatagtaagattagacgggatagaattag |
226 |
Q |
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| T |
1470512 |
gatgtttggtggtaagcaaccaacacaaacataaattaagcatagtagagatacaaaagttgtgttgggtatgttgtaaggctagacatgatagaattag |
1470413 |
T |
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| Q |
227 |
agctaacatgaacataaatttatgggacaataatacttgggtttacttg |
275 |
Q |
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| T |
1470412 |
acctaacatgaacataaatttatggggcaatactacttaggtttacttg |
1470364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 52442909 - 52442825
Alignment:
| Q |
129 |
tgtttggtggtaaacaatcagcacaaacataaattaagcatagtagatatgaggaagttgtgttcgatttatagtaagattagac |
213 |
Q |
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| T |
52442909 |
tgtttggtggtaatgaaacaacacaaaaataaattaagcgtagcagacatgaggatgttgtgttggatgtgtggtaagactagac |
52442825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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