View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_186 (Length: 268)
Name: NF20384_high_186
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_186 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 1425803 - 1425554
Alignment:
| Q |
1 |
tacttggtgactgaagattacgtggatcttaacctacatctaaaccttctaatacttctatcaagttacataatgatgataatacacattggtgatattc |
100 |
Q |
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| T |
1425803 |
tacttggtgactgaagattacttggatcttaacctacatctaaaccttctaatacttccatcaagttacataatgatgataatacacattggtgatattc |
1425704 |
T |
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| Q |
101 |
atacttacagaagactcattcattgaatttatcatctcacactacataactagatatcatgcaacaacttggctaattcttatccaaacccacaaatatt |
200 |
Q |
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| T |
1425703 |
atacttacaaaagacttattcattgaattcattatctcacattacataactagatatcatgcaacaacttggctaattcttatccaaacccacaaatatt |
1425604 |
T |
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| Q |
201 |
cattatagtactgcttgtagagttttcaaataccttaagcattggcttgt |
250 |
Q |
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| T |
1425603 |
cattatagtactgcttgtagagttttcaaataccttaagcattggcttgt |
1425554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 1447894 - 1447637
Alignment:
| Q |
1 |
tacttggtgactgaagattacgtggatcttaacctacatctaaaccttctaatacttctatcaagttacataatgatgataataca--cattggtgatat |
98 |
Q |
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| T |
1447894 |
tacttggtgactgaagattacttggatcttaacctacatctaaaccttctaatacttctatcaagttacataatgatgataatacacccattggtgatat |
1447795 |
T |
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| Q |
99 |
tcatacttacagaagactcattcattgaatttatcatctcacactacataactagatatca--tgc-------aacaacttggctaattcttatccaaac |
189 |
Q |
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| T |
1447794 |
tcctacttacaaaagactcattcattgaattcagtatctcacattacataactagatatcaccttcatcagttaacaacttagctaattcttatccaaac |
1447695 |
T |
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| Q |
190 |
ccacaaatattcattatagtactgcttgtagagttttcaaataccttaagcattggct |
247 |
Q |
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| T |
1447694 |
ccacaaatattcattgtagtactgcttgtagagttttcaaataccttaagcattggct |
1447637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 1470369 - 1470229
Alignment:
| Q |
1 |
tacttggtgactgaagattacgtggatcttaacctacatctaaaccttctaatacttctatcaagttacataatgatgataataca--cattggtgatat |
98 |
Q |
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|||||| |||||||||||||| ||||||| |||||| ||| | ||||| ||||||||| ||||||||| ||||||||||||||||| |||||||||||| |
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| T |
1470369 |
tacttgatgactgaagattacttggatctaaacctaaatcaagaccttataatacttccatcaagttatataatgatgataatacacccattggtgatat |
1470270 |
T |
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| Q |
99 |
tcatacttacagaagactcattcattgaatttatcatctca |
139 |
Q |
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| T |
1470269 |
tcctacttacaaaagaccccttcattgaattcattatctca |
1470229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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