View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_high_187 (Length: 268)
Name: NF20384_high_187
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_187 |
 |  |
|
| [»] chr4 (20 HSPs) |
 |  |
|
Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 20)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 3671489 - 3671222
Alignment:
| Q |
1 |
caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3671489 |
caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg |
3671390 |
T |
 |
| Q |
101 |
ctacatctggcagtacccatgagcaaatcgagtatttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3671389 |
ctacatctggcagtacccatgagcaaatcgagtatttggcgagccagggttgcattaagcctctgtgtgatttgctcgtttgctctgatccaaaaattgt |
3671290 |
T |
 |
| Q |
201 |
tactgtctgtttacaatgtcttgagaattttctgaaggttggagaagcagagaaaaaccccggttaca |
268 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3671289 |
tactgtctgtttgcaatgtcttgagaattttctgaaggttggagaagcggagaaaaaccccggttaca |
3671222 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 136 - 256
Target Start/End: Complemental strand, 55619307 - 55619187
Alignment:
| Q |
136 |
ttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctga |
235 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | |||||||||||||||| | |
|
|
| T |
55619307 |
ttggtgagccatggttgcattaagcctctgtgtgatttgcttgtttgccctgatccaaaaattgtttctgtctgtttagatggtcttgagaattttctaa |
55619208 |
T |
 |
| Q |
236 |
aggttggagaagcagagaaaa |
256 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
55619207 |
aggttggagaagcggagaaaa |
55619187 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 136 - 256
Target Start/End: Complemental strand, 55626611 - 55626491
Alignment:
| Q |
136 |
ttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctga |
235 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | |||||||||||||||| | |
|
|
| T |
55626611 |
ttggtgagccatggttgcattaagcctctgtgtgatttgcttgtttgccctgatccaaaaattgtttctgtctgtttagatggtcttgagaattttctaa |
55626512 |
T |
 |
| Q |
236 |
aggttggagaagcagagaaaa |
256 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
55626511 |
aggttggagaagcggagaaaa |
55626491 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 136 - 256
Target Start/End: Complemental strand, 55657657 - 55657537
Alignment:
| Q |
136 |
ttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctga |
235 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | |||||||||||||||| | |
|
|
| T |
55657657 |
ttggtgagccatggttgcattaagcctctgtgtgatttgcttgtttgccctgatccaaaaattgtttctgtctgtttagatggtcttgagaattttctaa |
55657558 |
T |
 |
| Q |
236 |
aggttggagaagcagagaaaa |
256 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
55657557 |
aggttggagaagcggagaaaa |
55657537 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 52983170 - 52983064
Alignment:
| Q |
150 |
ttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctgaaggttggagaagca |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
52983170 |
ttgcattaagcctctgtgtgatttgcttgtttgccctgatccaaaaattattattgtctgtttagaatgtcttgagaatattctgaaggttggagaagcg |
52983071 |
T |
 |
| Q |
250 |
gagaaaa |
256 |
Q |
| |
|
||||||| |
|
|
| T |
52983070 |
gagaaaa |
52983064 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 136 - 256
Target Start/End: Original strand, 54630127 - 54630247
Alignment:
| Q |
136 |
ttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctga |
235 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| |||||||| ||| || || |||||||||||||||| | |
|
|
| T |
54630127 |
ttggtgagccagggttgcattaagcctctgtgtgatttgctagtttgccctgatccaagaatagttactgtttgtctagaaggtcttgagaattttctaa |
54630226 |
T |
 |
| Q |
236 |
aggttggagaagcagagaaaa |
256 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
54630227 |
aggttggagaagcagagaaaa |
54630247 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 55636898 - 55637032
Alignment:
| Q |
1 |
caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| || |||||||||||||||||||| |||||||||| | ||| ||||| ||||||||||||| ||||| |
|
|
| T |
55636898 |
caggctgttattgaagctagtctgattgcccccctagtcaatcttcttcaaaatgccgagtttgacattgcaaaagaagctgcatgggcactctttaatg |
55636997 |
T |
 |
| Q |
101 |
ctacatctggcagtacccatgagcaaatcgagtat |
135 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| |
|
|
| T |
55636998 |
ttacatctggtggtacccatgagcaaatcaagtat |
55637032 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 144 - 258
Target Start/End: Complemental strand, 55663880 - 55663766
Alignment:
| Q |
144 |
ccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctgaaggttgga |
243 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||| ||||||| ||| || ||||||||||||||||| |||||||| |
|
|
| T |
55663880 |
ccagggttgcattaaacctctgtgtgatttgcttgtttgccctgatccaacaattgttgctgtctgcttagaaggtcttgagaattttctggaggttgga |
55663781 |
T |
 |
| Q |
244 |
gaagcagagaaaaac |
258 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
55663780 |
gaagcggagaaaaac |
55663766 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 142 - 256
Target Start/End: Complemental strand, 54861077 - 54860963
Alignment:
| Q |
142 |
agccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctgaaggttg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||| ||||||||| |||||||||||||||| || || ||||||||||| |||||||||||| |
|
|
| T |
54861077 |
agccagggttgcattaagcctctgtgtgatttgatggtttgccctgatccaagaattgttactgtctgtctagaaggtcttgagaatattctgaaggttg |
54860978 |
T |
 |
| Q |
242 |
gagaagcagagaaaa |
256 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
54860977 |
gagaagtggagaaaa |
54860963 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 52983420 - 52983286
Alignment:
| Q |
1 |
caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| || || ||||||||||||||| |||| |||||||||| | ||| ||||| ||||||||||||||||||| |
|
|
| T |
52983420 |
caggctgttattgaagctggtctgattgctcccctagtcaatcttcttcaatatgccgagtttgacattaaaaaagaagctgcatgggcactctctaatg |
52983321 |
T |
 |
| Q |
101 |
ctacatctggcagtacccatgagcaaatcgagtat |
135 |
Q |
| |
|
|||| | | | |||||| |||||||||| ||||| |
|
|
| T |
52983320 |
ctacgtttagtggtacccctgagcaaatcaagtat |
52983286 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 54861318 - 54861185
Alignment:
| Q |
1 |
caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg |
100 |
Q |
| |
|
|||||||| |||||||||||| ||||||| || || |||||||||||||||||||| |||||||||| | ||| ||||| |||||||||||| |||||| |
|
|
| T |
54861318 |
caggctgtcattgaagctggtttgattgctcccctagtcaatcttcttcaaaatgctgagtttgacattaaaaaagaagctgcatgggcactcactaatg |
54861219 |
T |
 |
| Q |
101 |
ctacatctggcagtacccatgagcaaatcgagta |
134 |
Q |
| |
|
||||||| || ||||||| ||||||||| |||| |
|
|
| T |
54861218 |
ctacatcaggtggtacccacgagcaaatcaagta |
54861185 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 136 - 248
Target Start/End: Original strand, 55637131 - 55637243
Alignment:
| Q |
136 |
ttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctga |
235 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||| | | |||||||| |||||||||||| ||| || || |||||||||||||||||| |
|
|
| T |
55637131 |
ttggagagccaaggttgcattaagcctctgtgtgatttgcttgctatccatgatccaagaattgttactgtttgtctagaaggtcttgagaattttctga |
55637230 |
T |
 |
| Q |
236 |
aggttggagaagc |
248 |
Q |
| |
|
||||||||||||| |
|
|
| T |
55637231 |
aggttggagaagc |
55637243 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 54629891 - 54630024
Alignment:
| Q |
1 |
caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||||||||| | |||||||| ||| ||||||| |||||| |
|
|
| T |
54629891 |
caggctgttattgaagctggtctgattgctcccctagtcaatcttcttcaaaatgcagagtttgacattacaaaggaagttgcacaggcactcactaatg |
54629990 |
T |
 |
| Q |
101 |
ctacatctggcagtacccatgagcaaatcgagta |
134 |
Q |
| |
|
||||||||| ||||||| ||||| ||| |||| |
|
|
| T |
54629991 |
ttacatctggtggtacccacgagcatatcaagta |
54630024 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 55664127 - 55663993
Alignment:
| Q |
1 |
caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||| || || || ||||||||||||||||| || ||||| | ||| ||||| ||||||||| | | ||||| |
|
|
| T |
55664127 |
caggctgttattgaagctggtctaattgctcccctagtaaatcttcttcaaaatgccgattttgaagttcaaaaagaagctgcatgggcattatttaatg |
55664028 |
T |
 |
| Q |
101 |
ctacatctggcagtacccatgagcaaatcgagtat |
135 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
55664027 |
ctacatctggcggtacccatgagcaaatcaagtat |
55663993 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 55619540 - 55619406
Alignment:
| Q |
1 |
caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg |
100 |
Q |
| |
|
||||||||||| |||||||||||||||| || || |||||||||||||||||||| ||| ||| | | ||| ||||| |||||||||||| ||||| |
|
|
| T |
55619540 |
caggctgttatcaaagctggtctgattgctcccctagtcaatcttcttcaaaatgccgagcttgcgattaaaaaagaagctgcatgggcactccgtaatg |
55619441 |
T |
 |
| Q |
101 |
ctacatctggcagtacccatgagcaaatcgagtat |
135 |
Q |
| |
|
||||||||| |||| |||||||||||| ||||| |
|
|
| T |
55619440 |
ctacatctgatggtactcatgagcaaatcaagtat |
55619406 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 55626844 - 55626710
Alignment:
| Q |
1 |
caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||| || || |||||||||||||||||||| ||| ||| | | ||| ||||| ||||| |||||| ||||| |
|
|
| T |
55626844 |
caggctgttatcgaagctggtctgattgctcccctagtcaatcttcttcaaaatgccgagcttgcgattaaaaaagaagctgcatgtgcactccgtaatg |
55626745 |
T |
 |
| Q |
101 |
ctacatctggcagtacccatgagcaaatcgagtat |
135 |
Q |
| |
|
||||||||| |||| |||||||||||| ||||| |
|
|
| T |
55626744 |
ctacatctgatggtactcatgagcaaatcaagtat |
55626710 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 55657890 - 55657756
Alignment:
| Q |
1 |
caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg |
100 |
Q |
| |
|
||||||||||| |||||||||||||||| || || |||||||||||||||||||| ||| ||| | | ||| ||||| |||||||||||| ||||| |
|
|
| T |
55657890 |
caggctgttatcaaagctggtctgattgctcccctagtcaatcttcttcaaaatgccgagcttgcgattaaaaaagaagctgcatgggcactccgtaatg |
55657791 |
T |
 |
| Q |
101 |
ctacatctggcagtacccatgagcaaatcgagtat |
135 |
Q |
| |
|
||||||||| |||| |||||||||||| ||||| |
|
|
| T |
55657790 |
ctacatctgatggtactcatgagcaaatcaagtat |
55657756 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 51316255 - 51316305
Alignment:
| Q |
1 |
caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaa |
51 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||| ||||||||||| |
|
|
| T |
51316255 |
caggctgttattgaagctggtctcattgctcccctggtcgatcttcttcaa |
51316305 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 50190501 - 50190412
Alignment:
| Q |
1 |
caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggca |
90 |
Q |
| |
|
|||||||||||||| || ||||| ||||| || || |||| |||||||||||||| |||||||||| | ||| ||||| ||||||||| |
|
|
| T |
50190501 |
caggctgttattgatgccggtcttattgctccacttgtcagacttcttcaaaatgcagagtttgacattaaaaaagaagctgcatgggca |
50190412 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 256
Target Start/End: Original strand, 54630322 - 54630355
Alignment:
| Q |
223 |
gagaattttctgaaggttggagaagcagagaaaa |
256 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
54630322 |
gagaaatttctgaaggttggagaagcagagaaaa |
54630355 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 9891185 - 9891318
Alignment:
| Q |
1 |
caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9891185 |
caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg |
9891284 |
T |
 |
| Q |
101 |
ctacatctggcagtacccatgagcaaatcgagta |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
9891285 |
ctacatctggcagtacccatgagcaaatcgagta |
9891318 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 9891426 - 9891561
Alignment:
| Q |
133 |
tatttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttc |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9891426 |
tatttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgaggattttc |
9891525 |
T |
 |
| Q |
233 |
tgaaggttggagaagcagagaaaaaccccggttaca |
268 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||| |
|
|
| T |
9891526 |
tgaaggttggagaagcggggaaaaaccccggttaca |
9891561 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 2 - 135
Target Start/End: Original strand, 13403306 - 13403439
Alignment:
| Q |
2 |
aggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatgc |
101 |
Q |
| |
|
|||||||||||||||| || |||||||| |||||||||||||||||||||||||| || ||||||| | ||| ||||| |||||||||||||| ||||| |
|
|
| T |
13403306 |
aggctgttattgaagccggactgattgctcctctggtcaatcttcttcaaaatgccgaatttgacattaaaaaagaagctgcatgggcactctccaatgc |
13403405 |
T |
 |
| Q |
102 |
tacatctggcagtacccatgagcaaatcgagtat |
135 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| |
|
|
| T |
13403406 |
tacatctggcggtacccatgagcaaatcaagtat |
13403439 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 136 - 256
Target Start/End: Original strand, 13403538 - 13403658
Alignment:
| Q |
136 |
ttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctga |
235 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| | ||||||||| | ||||||| ||||||||| ||||||||| || ||||||||||| |||||| |
|
|
| T |
13403538 |
ttggtgagccagggttgcattaagcctctgtgtgatcttcttgtttgccccgatccaagaattgttaccgtctgtttagaaggtcttgagaatattctga |
13403637 |
T |
 |
| Q |
236 |
aggttggagaagcagagaaaa |
256 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
13403638 |
agattggagaagcagagaaaa |
13403658 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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