View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_19 (Length: 618)
Name: NF20384_high_19
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 19 - 610
Target Start/End: Original strand, 2661774 - 2662365
Alignment:
| Q |
19 |
gattcaggggtagacacttgatcctcaagtaatggatccattaactcaatgactttaccttcgttccaaagcttccatgcctaacacgttttcatggtac |
118 |
Q |
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| T |
2661774 |
gattcaggggtagacacttgatcctcaagtaatggatccattaactcaatgactttaccttcgttccaaagcttccatgcctaacacgttttcatggtac |
2661873 |
T |
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| Q |
119 |
attatcaattgattcaattcataaaaattaaagttactcatttaatcatattataatatgtcaactattttatggaaacaaccatattgtaatattgcaa |
218 |
Q |
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| T |
2661874 |
attatcaattgattcaattcataaaaattaaagttactcatttaatcatattataatatgtcaactattttatggaaacaaccatattgtaatattgcaa |
2661973 |
T |
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| Q |
219 |
tttgatcataaggttgaggattacgcattgccggtgtaaaacttaattgcaccttcatccgatcagatttctctatgatgtcaatttgttattacactat |
318 |
Q |
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| T |
2661974 |
tttgatcataaggttgaggattacgcattgccggtgtaaaacttaattgcaccttcatccgatcagatttctctatgatgtcaatttgttattacactat |
2662073 |
T |
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| Q |
319 |
accggcaaacatttatatggtagaatttgattggatgattgttacactgtcagtgcatagttctcaaactctttgattatttcagatacatgcgcattca |
418 |
Q |
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| T |
2662074 |
accggcaaacatttatatggtagaatttgattggatgattgttacactgtcagtgcatagttctcaaactctttgattatttcagatacatgcgcattca |
2662173 |
T |
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| Q |
419 |
ttataatactcacatggcctaagagattcaacttgtgatcagggtgaaaaaatcctctgtttttcttgccactcaatagctctaaaagtaaaactccaaa |
518 |
Q |
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| T |
2662174 |
ttataatactcacatggcctaagagattcaacttgtgatcagggtgaaaaaatcctctgtttttcttgccactcaacagctctaaaagtaaaactccaaa |
2662273 |
T |
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| Q |
519 |
gctataaacatcagatttgaaagagaaatgtccatccattgtgtactctggaggcatgtatccactgcaacaatttcagaacatagaataat |
610 |
Q |
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| T |
2662274 |
gctataaacatcagatttgaaagagaaatgtccatccattgcgtactctggaggcatgtatccactgcaacaatttcagaacatagaataat |
2662365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 510 - 588
Target Start/End: Complemental strand, 5829949 - 5829871
Alignment:
| Q |
510 |
aactccaaagctataaacatcagatttgaaagagaaatgtccatccattgtgtactctggaggcatgtatccactgcaa |
588 |
Q |
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| T |
5829949 |
aactccaaagctaaaaacatcagattttattgagaaaaacccatgcactgcatactctggaggcatatatccactgcaa |
5829871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 588
Target Start/End: Complemental strand, 5804192 - 5804115
Alignment:
| Q |
511 |
actccaaagctataaacatcagatttgaaagagaaatgtccatccattgtgtactctggaggcatgtatccactgcaa |
588 |
Q |
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||||| |||||| ||||||||||||| | ||||||| ||||| || || || ||||||||||| |||||||||||| |
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| T |
5804192 |
actccgaagctaaaaacatcagattttatagagaaagatccatgcactgcatattctggaggcatatatccactgcaa |
5804115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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