View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_high_190 (Length: 257)
Name: NF20384_high_190
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_190 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 32230370 - 32230122
Alignment:
| Q |
10 |
agaagaaagaatgaaacgctgaaagcaaaagataaggcaaacattattagaacaacaggaaagcttccaggggcttgttcctgcttctaagaaagaaaga |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32230370 |
agaagaaagaatgaaacgctgaaagcaaaagataaggcaaacattattagaacaactggaaagcttccaggggcttgttcctgcttctaagaatgaaaga |
32230271 |
T |
|
| Q |
110 |
acaccaataagtatatatatgtgtaca-taatgtcatttggttttagtaacaaaacgaagttctgtaattatatgtttcactgttctatgaaatgtacat |
208 |
Q |
| |
|
| |||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32230270 |
aaaccaataagtatatatatgtacataataatgtcatttggttttagtaacaaaacgaagttctgtaattatatgtttcactgttctatgaaatgtacat |
32230171 |
T |
|
| Q |
209 |
gaacatcatgtatagttgcagtatacaaaatacacttggtttttcttct |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32230170 |
gaacatcatgtatagttgcagtatacaaaaaacacttggtttttcttct |
32230122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University