View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_191 (Length: 256)
Name: NF20384_high_191
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_191 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 9536007 - 9535879
Alignment:
| Q |
19 |
atgactattgaatctgtgtttgatgatgataaaaaactaagacaatgaatatcaaatatgattcaaaggtgaattgagaatttaaatatttaatctttta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9536007 |
atgactattgaatctgtgtttgatgatgataaaaaactaagacaatgaatatcaaatatgattcaaaggtgaattgagaatttaaatatttaatctttta |
9535908 |
T |
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| Q |
119 |
gaacaaatcaacaatcaatataaatacat |
147 |
Q |
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| T |
9535907 |
gaacaaatcaacaatcaatacaaatacat |
9535879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 9535820 - 9535741
Alignment:
| Q |
149 |
ttctgttagatgtggaaggatttccaacaacacctctactcagaattttacattgattaacgtcaccataagagacaata |
228 |
Q |
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| T |
9535820 |
ttctgctagatgtggaaggatttccaacaacacctctactcagaattttacattgattaatatcaccacaagagacaata |
9535741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 6143 - 6241
Alignment:
| Q |
19 |
atgactattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatgattcaaaggtgaattgaga-atttaaatatttaatctt |
115 |
Q |
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| T |
6143 |
atgactattgaatttgtgcatgatgatgataacaaaattaagacaatgaataacaaataagattcaaagctaaattgagagatttaaataatgaatctt |
6241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 23142370 - 23142442
Alignment:
| Q |
24 |
tattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatgattcaaaggtgaattga |
95 |
Q |
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| T |
23142370 |
tattgaatttgtgcgtgatgatgataacaaaattaagacaatgaatatcaaataagattcaaagttgaattga |
23142442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 17350060 - 17349939
Alignment:
| Q |
19 |
atgactattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatgattcaaaggtgaattgagaa-tttaaatatttaatcttt |
116 |
Q |
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||||||||||||| |||| || ||||||||| |||| |||||||||||| || || || ||||||||||||||||||||| || ||||| | | |||| |
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| T |
17350060 |
atgactattgaatttgtgcttagtgatgataacaaaattaagacaatgaaaataaactaagattcaaaggtgaattgagaagttcaaataatgactctta |
17349961 |
T |
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| Q |
117 |
tagaacaaatcaacaatcaata |
138 |
Q |
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|| | |||||||||||||||| |
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| T |
17349960 |
taaagaaaatcaacaatcaata |
17349939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 3462313 - 3462372
Alignment:
| Q |
39 |
tgatgatgataaaaaact-aagacaatgaatatcaaatatgattcaaaggtgaattgaga |
97 |
Q |
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| T |
3462313 |
tgatgatgataacaaaatcaagacaatgaatatcaaataagatttaaaggtgaattgaga |
3462372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 16192230 - 16192154
Alignment:
| Q |
19 |
atgactattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatgattcaaaggtgaattg |
94 |
Q |
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| T |
16192230 |
atgactatcgaatttgtgcgtaatgatgataacaaaattaggacaatgaatatcaaataagattcaaatgtgaattg |
16192154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 8815836 - 8815916
Alignment:
| Q |
18 |
catgactattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatgattcaaaggtgaattgaga |
97 |
Q |
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||||||||| |||| || || |||||||||||| |||| ||||||||||||| | |||| |||||||| |||||||||| |
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| T |
8815836 |
catgactatcgaatgtgggtgtgatgatgataacaaaattaagacaatgaattacgaataacattcaaagctgaattgaga |
8815916 |
T |
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