View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_high_198 (Length: 254)

Name: NF20384_high_198
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_high_198
NF20384_high_198
[»] chr2 (4 HSPs)
chr2 (92-254)||(13394818-13394980)
chr2 (139-187)||(13398019-13398067)
chr2 (1-36)||(41778944-41778979)
chr2 (1-33)||(43356545-43356577)
[»] chr1 (6 HSPs)
chr1 (1-47)||(4770617-4770663)
chr1 (1-47)||(40613049-40613096)
chr1 (1-47)||(24631865-24631911)
chr1 (1-33)||(17221523-17221555)
chr1 (1-33)||(21638139-21638171)
chr1 (1-45)||(29251780-29251824)
[»] chr8 (2 HSPs)
chr8 (9-45)||(18148727-18148763)
chr8 (1-44)||(21557459-21557503)
[»] chr4 (5 HSPs)
chr4 (1-47)||(19908718-19908765)
chr4 (1-36)||(25978343-25978378)
chr4 (11-47)||(16067909-16067946)
chr4 (3-36)||(42316824-42316857)
chr4 (1-33)||(1701635-1701667)
[»] chr3 (2 HSPs)
chr3 (1-47)||(10440710-10440757)
chr3 (1-37)||(19468477-19468513)
[»] chr7 (1 HSPs)
chr7 (1-30)||(28736639-28736668)
[»] chr6 (1 HSPs)
chr6 (1-33)||(1918461-1918493)
[»] chr5 (2 HSPs)
chr5 (1-33)||(5107248-5107280)
chr5 (1-45)||(5974216-5974260)


Alignment Details
Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 92 - 254
Target Start/End: Complemental strand, 13394980 - 13394818
Alignment:
Q  92 tatctctaaagttgtatatgtaatgttgtcacactccactttccacgtaccttaaaaatttggcccatttgaccaaaccaaaggatcaaactatacaaat 191  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13394980 tatctctaaagttctatatgtaatgttgtcacactccactttccacgtaccttaaaaatttggcccatttgaccaaaccaaaggatcaaactatacaaat 13394881  T
Q  192 ttatacaaaggtataagttttattaaaaggagttggaaacacagataataataaattatcatt 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13394880 ttatacaaaggtataagttttattaaaaggagttggaaacacagataataataaattatcatt 13394818  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 13398067 - 13398019
Alignment:
Q  139 taccttaaaaatttggcccatttgaccaaaccaaaggatcaaactatac 187  Q
    ||||||||||||| |  ||||||||||||||||||||||||||||||||    
T  13398067 taccttaaaaattcgatccatttgaccaaaccaaaggatcaaactatac 13398019  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 41778979 - 41778944
Alignment:
Q  1 aatgcatgatatatgcaaggtccgaggttcgaatcc 36  Q
    ||||||| ||||||||||||||||||||||||||||    
T  41778979 aatgcataatatatgcaaggtccgaggttcgaatcc 41778944  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 43356577 - 43356545
Alignment:
Q  1 aatgcatgatatatgcaaggtccgaggttcgaa 33  Q
    ||||||| |||||||||||||||||||||||||    
T  43356577 aatgcataatatatgcaaggtccgaggttcgaa 43356545  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4770663 - 4770617
Alignment:
Q  1 aatgcatgatatatgcaaggtccgaggttcgaatccgaccaccacaa 47  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||||    
T  4770663 aatgcatgatatatataaggtctgaggttcgaatccgaccaccacaa 4770617  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40613049 - 40613096
Alignment:
Q  1 aatgcatgatatatgcaaggtccgaggttcgaatc-cgaccaccacaa 47  Q
    ||||||| |||||||||||||||| |||||||||| ||||||||||||    
T  40613049 aatgcataatatatgcaaggtccggggttcgaatctcgaccaccacaa 40613096  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24631865 - 24631911
Alignment:
Q  1 aatgcatgatatatgcaaggtccgaggttcgaatccgaccaccacaa 47  Q
    ||||||| ||||||||||| ||| |||||||||||||| ||||||||    
T  24631865 aatgcataatatatgcaagatccaaggttcgaatccgaacaccacaa 24631911  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 17221555 - 17221523
Alignment:
Q  1 aatgcatgatatatgcaaggtccgaggttcgaa 33  Q
    ||||||| |||||||||||||||||||||||||    
T  17221555 aatgcataatatatgcaaggtccgaggttcgaa 17221523  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 21638139 - 21638171
Alignment:
Q  1 aatgcatgatatatgcaaggtccgaggttcgaa 33  Q
    |||||||||||||||||||||||| ||||||||    
T  21638139 aatgcatgatatatgcaaggtccggggttcgaa 21638171  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29251780 - 29251824
Alignment:
Q  1 aatgcatgatatatgcaaggtccgaggttcgaatccgaccaccac 45  Q
    ||||||| |||||||||||||| |||||||||| ||| |||||||    
T  29251780 aatgcataatatatgcaaggtctgaggttcgaacccggccaccac 29251824  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 18148763 - 18148727
Alignment:
Q  9 atatatgcaaggtccgaggttcgaatccgaccaccac 45  Q
    |||||||||||||||||||||||| ||||||||||||    
T  18148763 atatatgcaaggtccgaggttcgagtccgaccaccac 18148727  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 21557459 - 21557503
Alignment:
Q  1 aatgcatgatatatgcaaggtccgaggttcgaat-ccgaccacca 44  Q
    ||||||| ||||||| |||||||||||||||||| ||||||||||    
T  21557459 aatgcataatatatgtaaggtccgaggttcgaatcccgaccacca 21557503  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 19908718 - 19908765
Alignment:
Q  1 aatgcatgatatatgcaaggtccgaggttcgaa-tccgaccaccacaa 47  Q
    ||||||| |||||||||||||||||||||||||  |||||||||||||    
T  19908718 aatgcataatatatgcaaggtccgaggttcgaaccccgaccaccacaa 19908765  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 25978343 - 25978378
Alignment:
Q  1 aatgcatgatatatgcaaggtccgaggttcgaatcc 36  Q
    ||||||| ||||||||||||||||||||||||||||    
T  25978343 aatgcataatatatgcaaggtccgaggttcgaatcc 25978378  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 16067946 - 16067909
Alignment:
Q  11 atatgcaaggtccgaggttcgaa-tccgaccaccacaa 47  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  16067946 atatgcaaggtccgaggttcgaactccgaccaccacaa 16067909  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 42316857 - 42316824
Alignment:
Q  3 tgcatgatatatgcaaggtccgaggttcgaatcc 36  Q
    ||||| ||||||||||||||||||||||||||||    
T  42316857 tgcataatatatgcaaggtccgaggttcgaatcc 42316824  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1701635 - 1701667
Alignment:
Q  1 aatgcatgatatatgcaaggtccgaggttcgaa 33  Q
    ||||||| |||||||||||||||||||||||||    
T  1701635 aatgcataatatatgcaaggtccgaggttcgaa 1701667  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10440710 - 10440757
Alignment:
Q  1 aatgcatgatatatgcaaggtccgaggttcgaa-tccgaccaccacaa 47  Q
    ||||||| ||||||||||||| ||||||||||| ||||||||||||||    
T  10440710 aatgcataatatatgcaaggtacgaggttcgaattccgaccaccacaa 10440757  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19468477 - 19468513
Alignment:
Q  1 aatgcatgatatatgcaaggtccgaggttcgaatccg 37  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  19468477 aatgcataatatatgcaaggtccgtggttcgaatccg 19468513  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 28736668 - 28736639
Alignment:
Q  1 aatgcatgatatatgcaaggtccgaggttc 30  Q
    ||||||||||||||||||||||||||||||    
T  28736668 aatgcatgatatatgcaaggtccgaggttc 28736639  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1918493 - 1918461
Alignment:
Q  1 aatgcatgatatatgcaaggtccgaggttcgaa 33  Q
    ||||||| |||||||||||||||||||||||||    
T  1918493 aatgcataatatatgcaaggtccgaggttcgaa 1918461  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 5107280 - 5107248
Alignment:
Q  1 aatgcatgatatatgcaaggtccgaggttcgaa 33  Q
    ||||||| |||||||||||||||||||||||||    
T  5107280 aatgcataatatatgcaaggtccgaggttcgaa 5107248  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 5974260 - 5974216
Alignment:
Q  1 aatgcatgatatatgcaaggtccgaggttcgaatccgaccaccac 45  Q
    ||||||| |||||||||||||| ||||||| ||||||| ||||||    
T  5974260 aatgcataatatatgcaaggtctgaggttcaaatccgatcaccac 5974216  T

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