View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_high_20 (Length: 613)

Name: NF20384_high_20
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_high_20
NF20384_high_20
[»] chr5 (6 HSPs)
chr5 (27-600)||(2935143-2935730)
chr5 (320-394)||(10142070-10142144)
chr5 (300-358)||(43541899-43541958)
chr5 (321-364)||(43405435-43405478)
chr5 (323-376)||(27592549-27592602)
chr5 (323-376)||(30325971-30326024)
[»] chr8 (1 HSPs)
chr8 (269-390)||(34861226-34861351)
[»] chr1 (7 HSPs)
chr1 (302-409)||(28218123-28218233)
chr1 (320-394)||(2225236-2225310)
chr1 (319-394)||(41958095-41958170)
chr1 (248-364)||(15468262-15468387)
chr1 (321-394)||(1093168-1093241)
chr1 (262-299)||(51732393-51732430)
chr1 (320-376)||(41095703-41095759)
[»] chr3 (4 HSPs)
chr3 (304-391)||(138778-138866)
chr3 (323-394)||(46450077-46450148)
chr3 (244-301)||(48351550-48351607)
chr3 (299-346)||(41707511-41707559)
[»] scaffold0018 (1 HSPs)
scaffold0018 (320-375)||(27843-27898)
[»] chr7 (7 HSPs)
chr7 (302-376)||(7775030-7775105)
chr7 (321-376)||(44511031-44511086)
chr7 (308-394)||(8073369-8073458)
chr7 (320-395)||(22189948-22190025)
chr7 (302-407)||(6442162-6442270)
chr7 (320-365)||(12263530-12263575)
chr7 (302-346)||(32605391-32605436)
[»] chr4 (2 HSPs)
chr4 (333-376)||(1559824-1559867)
chr4 (302-406)||(47009187-47009294)
[»] chr6 (2 HSPs)
chr6 (323-376)||(4595772-4595825)
chr6 (321-394)||(34905346-34905421)
[»] chr2 (1 HSPs)
chr2 (322-358)||(38464211-38464247)


Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 27 - 600
Target Start/End: Complemental strand, 2935730 - 2935143
Alignment:
Q  27 caagtgaacgatggtgatggagtttcatgggtggagaattacactgcttcccgtccggtaaaaatacacactttaggaaacatttgactatttaagagta 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2935730 caagtgaacgatggtgatggagtttcatgggtggagaattacactgcttcccgtccggtaaaaatacacactttaggaaacatttgactatttaagagta 2935631  T
Q  127 tttgtaaaaatatgtttaatgagtgcaggcaaccttttctttgaaggagagtggcaacctaactcgctctacttatgtaaaatagtttgctttttattat 226  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2935630 tttgtaaaaatatgtttaacgagtgtaggcaaccttttctttgaaggagagtggcaacctaactcgctctacttatgtaaaatagtttgcattttattat 2935531  T
Q  227 gttt-------------tttgaggaataatacattctcttttgagcaatttctcaaatactcactcttttattgatttaaattattatactttaaaaatt 313  Q
    ||||             ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||    
T  2935530 gtttccacatgtaatgctttgaggaataatacattctcttttgaacaatttctctaatactcactcttttattggtttaaattattatactttgaaaatt 2935431  T
Q  314 gaattccacaaagtgatgagacatacattgattcca-ttcaataaatgagtgggtgctaaagagtgtcgaaaaatgagtgtttttaaccttcctctcctc 412  Q
    ||||||||||||  ||||||||||||||| |||||| || ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  2935430 gaattccacaaaccgatgagacatacattaattccattttaataaataagtgggtgctaaagagtgtcgaaaagtgagtgtttttaaccttcctcttctc 2935331  T
Q  413 tgagatctatgttgcctttaaagaatcgtgaacgatttatccaacnnnnnnntattattcatgtcttgcatgtgacccataaacatctttttaatctatg 512  Q
    ||| ||||||||||||||||||||||||||||||||||||| ||         || ||||||||||||||| ||||||||||||||| ||||||||||||    
T  2935330 tgaaatctatgttgcctttaaagaatcgtgaacgatttatctaataaaaagagatgattcatgtcttgcatatgacccataaacatc-ttttaatctatg 2935232  T
Q  513 ttaatttcatgtttctcttataatcaaatcaacacttgaattga-acatatgataccccctcttgtatcaactagtataaatatttttt 600  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  2935231 ttaatttcatgtttctcttataatcaaatcaacacttgaattgacacatatgataccccctcttgtatcaactattataaatatttttt 2935143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 320 - 394
Target Start/End: Original strand, 10142070 - 10142144
Alignment:
Q  320 cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagagtgtcgaaaaatgagtgtt 394  Q
    ||||||||| || ||||||||||||||  || ||||||| ||||| |||||| ||||||| ||||||||||||||    
T  10142070 cacaaagtggtgggacatacattgattttatccaataaaagagtgagtgctatagagtgttgaaaaatgagtgtt 10142144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 300 - 358
Target Start/End: Complemental strand, 43541958 - 43541899
Alignment:
Q  300 atactttaaaaattgaattc-cacaaagtgatgagacatacattgattccattcaataaa 358  Q
    ||||||| ||||||||| || |||||||||||||||||||||||||||  ||||||||||    
T  43541958 atactttgaaaattgaactcacacaaagtgatgagacatacattgattttattcaataaa 43541899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 364
Target Start/End: Complemental strand, 43405478 - 43405435
Alignment:
Q  321 acaaagtgatgagacatacattgattccattcaataaatgagtg 364  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||    
T  43405478 acaaagtggtgagacatacattgatttcattcaataaaagagtg 43405435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 27592549 - 27592602
Alignment:
Q  323 aaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagag 376  Q
    |||||| ||||||||||||||||| ||| |||||||  |||| |||||||||||    
T  27592549 aaagtggtgagacatacattgatttcatccaataaaatagtgagtgctaaagag 27592602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 30325971 - 30326024
Alignment:
Q  323 aaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagag 376  Q
    |||||| ||||||||||||||||| ||| |||||||  |||| |||||||||||    
T  30325971 aaagtggtgagacatacattgatttcatccaataaaatagtgagtgctaaagag 30326024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 269 - 390
Target Start/End: Original strand, 34861226 - 34861351
Alignment:
Q  269 aatactcactcttttattgatttaaattattat---actttaaaaattgaat-tccacaaagtgatgagacatacattgattccattcaataaatgagtg 364  Q
    |||||||||||| |||||| ||||||||||| |   ||||| |||||||||  | ||||||||| || |||||||||||||| ||| ||||||| |||||    
T  34861226 aatactcactctcttattggtttaaattattgtgggactttgaaaattgaacctacacaaagtggtgggacatacattgatttcatccaataaaagagtg 34861325  T
Q  365 ggtgctaaagagtgtcgaaaaatgag 390  Q
     |||||| ||||||| ||||| ||||    
T  34861326 agtgctagagagtgttgaaaagtgag 34861351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 302 - 409
Target Start/End: Original strand, 28218123 - 28218233
Alignment:
Q  302 actttaaaaattgaattc-cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaa--agagtgtcgaaaaatgagtgttttta 398  Q
    ||||| |||||||||| | ||||||||| ||||||||||||||||| ||| ||||||| |||||  ||||||  |||| || ||||||||||||||  ||    
T  28218123 actttgaaaattgaatccacacaaagtggtgagacatacattgatttcatccaataaaagagtgaatgctaaagagagggttgaaaaatgagtgttgcta 28218222  T
Q  399 accttcctctc 409  Q
    |||||||||||    
T  28218223 accttcctctc 28218233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 320 - 394
Target Start/End: Complemental strand, 2225310 - 2225236
Alignment:
Q  320 cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagagtgtcgaaaaatgagtgtt 394  Q
    ||||||||| || |||||||||||||| ||| ||||||| |||||||||||| ||||||| ||||| ||||||||    
T  2225310 cacaaagtggtgggacatacattgatttcatccaataaaagagtgggtgctagagagtgttgaaaattgagtgtt 2225236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 319 - 394
Target Start/End: Complemental strand, 41958170 - 41958095
Alignment:
Q  319 ccacaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagagtgtcgaaaaatgagtgtt 394  Q
    ||||||| || || |||||||||||||| ||| ||||||||||||| |||||  ||||||| ||||| ||||||||    
T  41958170 ccacaaaatggtgggacatacattgatttcatccaataaatgagtgagtgcttgagagtgttgaaaagtgagtgtt 41958095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 248 - 364
Target Start/End: Complemental strand, 15468387 - 15468262
Alignment:
Q  248 tctcttttgagcaatttctcaaatactcactcttttattgatttaaattat--------tatactttaaaaattgaattc-cacaaagtgatgagacata 338  Q
    |||||||||| || | ||||||||||| ||||||||||| |||||||||||        || ||| | |||||||||  | |||||||| ||||||||||    
T  15468387 tctcttttgaacactatctcaaatacttactcttttattaatttaaattattgtgggtctacactatgaaaattgaacccacacaaagtaatgagacata 15468288  T
Q  339 cattgattccattcaataaatgagtg 364  Q
    ||||||||| ||| |||||| |||||    
T  15468287 cattgattctatttaataaaagagtg 15468262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 394
Target Start/End: Original strand, 1093168 - 1093241
Alignment:
Q  321 acaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagagtgtcgaaaaatgagtgtt 394  Q
    |||||||| ||  ||||||||||||| |||  |||||| ||||| ||||||||||||||  |||||| ||||||    
T  1093168 acaaagtggtggaacatacattgatttcatctaataaacgagtgcgtgctaaagagtgtgcaaaaataagtgtt 1093241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 299
Target Start/End: Complemental strand, 51732430 - 51732393
Alignment:
Q  262 tttctcaaatactcactcttttattgatttaaattatt 299  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  51732430 tttctctaatactcactcttttattggtttaaattatt 51732393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 320 - 376
Target Start/End: Original strand, 41095703 - 41095759
Alignment:
Q  320 cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagag 376  Q
    |||| ||||||| |||||||||||||| ||  ||||||||||||| |||||| ||||    
T  41095703 cacagagtgatgggacatacattgatttcacccaataaatgagtgagtgctagagag 41095759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 391
Target Start/End: Complemental strand, 138866 - 138778
Alignment:
Q  304 tttaaaaattgaattcc-acaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagagtgtcgaaaaatgagt 391  Q
    |||||||||||||| |  ||||| || ||||||||||||||||| ||||||||||| ||||| |||||| ||||| | ||||| |||||    
T  138866 tttaaaaattgaatacatacaaaatggtgagacatacattgatttcattcaataaaagagtgagtgctagagagtcttgaaaactgagt 138778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 394
Target Start/End: Complemental strand, 46450148 - 46450077
Alignment:
Q  323 aaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagagtgtcgaaaaatgagtgtt 394  Q
    |||||| || ||||||||||||||||||  |||||| ||||| |||||| |||||||  |||| ||||||||    
T  46450148 aaagtggtgggacatacattgattccatctaataaaagagtgagtgctagagagtgttcaaaagtgagtgtt 46450077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 48351607 - 48351550
Alignment:
Q  244 acattctcttttgagcaatttctcaaatactcactcttttattgatttaaattattat 301  Q
    |||||||||||||| || |||||| |||||||  ||| |||||||||||||| |||||    
T  48351607 acattctcttttgaacattttctctaatactctttctcttattgatttaaatcattat 48351550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 299 - 346
Target Start/End: Original strand, 41707511 - 41707559
Alignment:
Q  299 tatactttaaaaattgaattc-cacaaagtgatgagacatacattgatt 346  Q
    ||||||||||||||||||  | ||||||||||||| |||||||||||||    
T  41707511 tatactttaaaaattgaacccacacaaagtgatgaaacatacattgatt 41707559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 375
Target Start/End: Complemental strand, 27898 - 27843
Alignment:
Q  320 cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaaga 375  Q
    ||||||||| || |||||||||||||||||| ||||||| | ||| ||||||||||    
T  27898 cacaaagtggtgggacatacattgattccatccaataaaagcgtgagtgctaaaga 27843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 376
Target Start/End: Complemental strand, 7775105 - 7775030
Alignment:
Q  302 actttaaaaattgaattc-cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagag 376  Q
    ||||| ||||||||| || ||||||||| || |||||||||||||| ||| ||||||| ||||| |||||| ||||    
T  7775105 actttgaaaattgaactcacacaaagtggtgggacatacattgatttcatccaataaaagagtgagtgctatagag 7775030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 376
Target Start/End: Original strand, 44511031 - 44511086
Alignment:
Q  321 acaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagag 376  Q
    |||||||||||||||||||||||||| ||| |||||||  |||| |||||| ||||    
T  44511031 acaaagtgatgagacatacattgatttcatccaataaaaaagtgagtgctagagag 44511086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 308 - 394
Target Start/End: Original strand, 8073369 - 8073458
Alignment:
Q  308 aaaattgaa-ttccacaaagtgatgagacatacattgattccattcaataaatgagtgggtgcta--aagagtgtcgaaaaatgagtgtt 394  Q
    ||||||||| || ||||||||| || |||||||||||||| ||| | ||||| ||||| ||||||  |||| ||| ||||||||||||||    
T  8073369 aaaattgaacttacacaaagtggtgggacatacattgatttcatccgataaaagagtgagtgctaggaagaatgttgaaaaatgagtgtt 8073458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 320 - 395
Target Start/End: Complemental strand, 22190025 - 22189948
Alignment:
Q  320 cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgct--aaagagtgtcgaaaaatgagtgttt 395  Q
    ||||||||| || | |||||||||||| ||| ||||||| ||||| |||||  | ||||||| |||||||||||||||    
T  22190025 cacaaagtggtgggccatacattgatttcatccaataaaagagtgagtgctagagagagtgttgaaaaatgagtgttt 22189948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 407
Target Start/End: Complemental strand, 6442270 - 6442162
Alignment:
Q  302 actttaaaaattgaattcc-acaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagag--tgtcgaaaaatgagtgttttta 398  Q
    ||||| |||||||||| || ||||| || ||  ||||||||||||| ||| |||||||||| || ||| || ||||  ||| |||||||||||||| |||    
T  6442270 actttgaaaattgaatccccacaaaatggtggaacatacattgatttcatacaataaatgactgagtgatagagagagtgttgaaaaatgagtgttgtta 6442171  T
Q  399 accttcctc 407  Q
    || ||||||    
T  6442170 acattcctc 6442162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 365
Target Start/End: Original strand, 12263530 - 12263575
Alignment:
Q  320 cacaaagtgatgagacatacattgattccattcaataaatgagtgg 365  Q
    |||||||||||| |||||||||||||||||| | ||||| ||||||    
T  12263530 cacaaagtgatgggacatacattgattccatccgataaaagagtgg 12263575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 32605436 - 32605391
Alignment:
Q  302 actttaaaaattgaattc-cacaaagtgatgagacatacattgatt 346  Q
    |||||||||||||||| | |||||||| ||||||||||||||||||    
T  32605436 actttaaaaattgaatccacacaaagtaatgagacatacattgatt 32605391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 376
Target Start/End: Original strand, 1559824 - 1559867
Alignment:
Q  333 gacatacattgattccattcaataaatgagtgggtgctaaagag 376  Q
    ||||||| |||||||||||||||||| ||||| |||||||||||    
T  1559824 gacatacgttgattccattcaataaaggagtgagtgctaaagag 1559867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 47009294 - 47009187
Alignment:
Q  302 actttaaaaattgaattc-cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgcta--aagagtgtcgaaaaatgagtgttttta 398  Q
    ||||| ||||||||| || ||||||| | ||||||| ||||| |||  || ||||||| ||||| ||||||  |||||||| ||||||||||| || |||    
T  47009294 actttgaaaattgaactcacacaaagcggtgagacaaacattaattttatccaataaaagagtgagtgctagaaagagtgttgaaaaatgagttttgtta 47009195  T
Q  399 accttcct 406  Q
    || |||||    
T  47009194 acattcct 47009187  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 4595825 - 4595772
Alignment:
Q  323 aaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagag 376  Q
    |||||| ||||||||||||||||| || |||||||| ||||| |||||| ||||    
T  4595825 aaagtggtgagacatacattgatttcactcaataaaagagtgagtgctagagag 4595772  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 321 - 394
Target Start/End: Complemental strand, 34905421 - 34905346
Alignment:
Q  321 acaaagtgatgagacatacattgattccattcaataaatgagtgggtgct--aaagagtgtcgaaaaatgagtgtt 394  Q
    |||||||| || |||||||||||||| ||| ||||||| ||||| ||| |  | ||||||| ||||||||||||||    
T  34905421 acaaagtggtgggacatacattgatttcatccaataaaagagtgagtgttagagagagtgttgaaaaatgagtgtt 34905346  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 322 - 358
Target Start/End: Complemental strand, 38464247 - 38464211
Alignment:
Q  322 caaagtgatgagacatacattgattccattcaataaa 358  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  38464247 caaagtgatgagacatacattgatttcatacaataaa 38464211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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