View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_202 (Length: 252)
Name: NF20384_high_202
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_202 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 49916625 - 49916389
Alignment:
| Q |
1 |
attatccttgttggccttaacaactccagaggaactcaataacaattcattctttcttgcttcctttgccaattcttccacagctttccttgcatcatcc |
100 |
Q |
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| T |
49916625 |
attatccttgttggccttaacaactccagaggaactcaataacaattcattctttcttgcttcctttgccaattcttccacagctttccttgcatcatcc |
49916526 |
T |
|
| Q |
101 |
tttcgaaaattcttctctttcttgatcgacatagttcttgccaatccgttgacaaaagatgggaaatgaaccatgataactgcatgccaattattgtttt |
200 |
Q |
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| T |
49916525 |
tttcgaaaattcttctctttcttgatcgacatagttcttgccaatccgttgacaaaagatgggaaatgaaccatgataactgcatgccaattattgtttt |
49916426 |
T |
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| Q |
201 |
agaaattaacacactcaacatatatatagttctaagt |
237 |
Q |
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| T |
49916425 |
agaaattaacacactcaacatatatatagttctaagt |
49916389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 13736623 - 13736702
Alignment:
| Q |
20 |
acaactccagaggaactcaataacaattcattctttcttgcttcctttgccaattcttccacagctttccttgcatcatc |
99 |
Q |
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|||| |||||| |||||||| |||| ||||||||| ||||||||||||||| | |||||||| |||||||||||||||| |
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| T |
13736623 |
acaattccagatgaactcaacaacatttcattcttctttgcttcctttgccattgcttccacaactttccttgcatcatc |
13736702 |
T |
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