View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_204 (Length: 251)
Name: NF20384_high_204
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_204 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 30274532 - 30274744
Alignment:
| Q |
16 |
gagaagaagtaaaggatcagtggagaaatatcctccatacattccaatttccactaggaattgcacatccataataaactgttcaaggaataaagataat |
115 |
Q |
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| T |
30274532 |
gagaagaagtaaaggatcagtggagaaatatcctccatacattccaatttccactaggaattgcacatccataataaactgttcaaggaataaagataat |
30274631 |
T |
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| Q |
116 |
ggatgagaaattgagaagcatgttgttttcaaaactctctcatagtgaaactcaataataaacagaagggagggaagtggaaaacctgtttggcttcatc |
215 |
Q |
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| T |
30274632 |
ggatgagaaattgagaagcatgttgttttcaaaa--ctctcatagtgaaactcaataataaacagaagggagggaagtggaaaacctgtttggcttcatc |
30274729 |
T |
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| Q |
216 |
agtttgtaagctaac |
230 |
Q |
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| T |
30274730 |
agtttgtaagctaac |
30274744 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 46270591 - 46270536
Alignment:
| Q |
172 |
aataaacagaagggagggaagtggaaaacctgtttggcttcatcagtttgtaagct |
227 |
Q |
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|||||||| |||| |||||| | |||||||||||||| ||||||||||||||||| |
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| T |
46270591 |
aataaacacaaggtagggaaatcaaaaacctgtttggcctcatcagtttgtaagct |
46270536 |
T |
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