View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_208 (Length: 250)
Name: NF20384_high_208
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_208 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 38894844 - 38895080
Alignment:
| Q |
1 |
tgacctagatgtttgattagttgtttcatggtttgtgcatgagattggtttgaaaattgaagaaaaatgagttcctgtgttagggacaagagaattttgc |
100 |
Q |
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| T |
38894844 |
tgacctagatgtttgattagttgtttcatggtttgtgcatgagattggtttgaaaattgaagaaaaatgagttcctatgttagggacaagagaattttgc |
38894943 |
T |
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| Q |
101 |
ataatgttgtaattaccaatgttgttacctcccattcctaataatgagttgtttatgtttgttgatccatttattctagctgtttcttctgctaaggcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38894944 |
ataatgttgtaattaccaatgttgttacctcccattcctaataatgagttgtttatgtttgttgatccatttattctagctgtttcttctgctaaggcat |
38895043 |
T |
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| Q |
201 |
cacaaaatgccctgtgagtgacaaagctatccctcct |
237 |
Q |
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| T |
38895044 |
cacaaaatgccctgtgagtgacaaagctatccctcct |
38895080 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 30517340 - 30517380
Alignment:
| Q |
179 |
gctgtttcttctgctaaggcatcacaaaatgccctgtgagt |
219 |
Q |
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| T |
30517340 |
gctgtttcttctgctaaggcatcacaaaaggctctgtgagt |
30517380 |
T |
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