View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_high_212 (Length: 250)

Name: NF20384_high_212
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_high_212
NF20384_high_212
[»] chr6 (3 HSPs)
chr6 (13-129)||(33664711-33664827)
chr6 (13-98)||(33686513-33686598)
chr6 (169-250)||(33664828-33664908)


Alignment Details
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 33664711 - 33664827
Alignment:
Q  13 aatatggatgcatacatatattatgagaaagagagattagctataagaaatatatgaagaaaaaatgtatgttatattaatatcgtgatgttaatacatt 112  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  33664711 aatatggatgcatacatatattatgagaaagagagattagttataagaaatatatgaagaagaaatgtatgttatattaatatcgtgatgttaatccatt 33664810  T
Q  113 actttgtgtctaggatg 129  Q
    |||||||||||||||||    
T  33664811 actttgtgtctaggatg 33664827  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 33686513 - 33686598
Alignment:
Q  13 aatatggatgcatacatatattatgagaaagagagattagctataagaaatatatgaagaaaaaatgtatgttatattaatatcgt 98  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  33686513 aatatggatgcatacatatattatgagaaagagagattagttataagaaatatatgaagaagaaatgtatgttatattaatatcgt 33686598  T

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Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 33664828 - 33664908
Alignment:
Q  169 aaaacttgagcaatttgaaccgcaccttttatttctctttagggtgtgcctggtttttggttgtattactaagcttttgttc 250  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||    
T  33664828 aaaacttgagcaatttgaaccgcaccttttatt-ctctttagggtttgcctggtttttggttgtattactgagcttttgttc 33664908  T

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