View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_high_218 (Length: 248)

Name: NF20384_high_218
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_high_218
NF20384_high_218
[»] chr7 (2 HSPs)
chr7 (13-83)||(37410992-37411062)
chr7 (13-79)||(17074654-17074722)
[»] chr4 (3 HSPs)
chr4 (13-79)||(16862091-16862159)
chr4 (13-79)||(22631357-22631425)
chr4 (20-79)||(23979515-23979576)
[»] chr5 (2 HSPs)
chr5 (20-79)||(19783463-19783524)
chr5 (21-79)||(28073847-28073907)
[»] chr8 (1 HSPs)
chr8 (13-79)||(26655029-26655097)
[»] chr6 (1 HSPs)
chr6 (13-79)||(15828507-15828575)
[»] chr1 (1 HSPs)
chr1 (13-79)||(50960869-50960937)
[»] chr3 (1 HSPs)
chr3 (13-79)||(37437080-37437148)


Alignment Details
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 37411062 - 37410992
Alignment:
Q  13 aatatgcgagtagttaaaatttgaatttgcatgatgataaaagataaagaaataacaaatattttaaccaa 83  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37411062 aatatgcgagtagttaaaatttgaatttgcatgatgctaaaagataaagaaataacaaatattttaaccaa 37410992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 17074654 - 17074722
Alignment:
Q  13 aatatgcgagtagttaaaatttgaatttgcat--gatgataaaagataaagaaataacaaatattttaa 79  Q
    |||||| ||||||||| |||||||||| ||||  |||| |||||||||||||||||||||||| |||||    
T  17074654 aatatgtgagtagttacaatttgaattggcatatgatgctaaaagataaagaaataacaaataatttaa 17074722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 16862091 - 16862159
Alignment:
Q  13 aatatgcgagtagttaaaatttgaatttgcat--gatgataaaagataaagaaataacaaatattttaa 79  Q
    |||||||||||||||||||||| |||| ||||  |||| |||||||||| ||||||||||||| |||||    
T  16862091 aatatgcgagtagttaaaattttaattggcatatgatgctaaaagataatgaaataacaaataatttaa 16862159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 22631425 - 22631357
Alignment:
Q  13 aatatgcgagtagttaaaatttgaatttgcat--gatgataaaagataaagaaataacaaatattttaa 79  Q
    |||||| |||||||||||||||||||| ||||  |||| |||||||||||||||||| ||||| |||||    
T  22631425 aatatgtgagtagttaaaatttgaattggcatatgatgctaaaagataaagaaataaaaaataatttaa 22631357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 23979515 - 23979576
Alignment:
Q  20 gagtagttaaaatttgaatttgcat--gatgataaaagataaagaaataacaaatattttaa 79  Q
    ||||||||||||||| ||||  |||  |||| |||||||||||||||||||||||| |||||    
T  23979515 gagtagttaaaatttaaattgacatatgatgctaaaagataaagaaataacaaataatttaa 23979576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 19783463 - 19783524
Alignment:
Q  20 gagtagttaaaatttgaatttgcat--gatgataaaagataaagaaataacaaatattttaa 79  Q
    |||||||||||||||||||| | ||  |||| |||||||||||||||||||||||| |||||    
T  19783463 gagtagttaaaatttgaattggtatatgatgttaaaagataaagaaataacaaataatttaa 19783524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 28073907 - 28073847
Alignment:
Q  21 agtagttaaaatttgaatttgcatg--atgataaaagataaagaaataacaaatattttaa 79  Q
    |||||||||||||||||||  |||   ||| |||||||||||||||||||||||| |||||    
T  28073907 agtagttaaaatttgaattgacatataatgctaaaagataaagaaataacaaataatttaa 28073847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 26655097 - 26655029
Alignment:
Q  13 aatatgcgagtagttaaaatttgaatttgcat--gatgataaaagataaagaaataacaaatattttaa 79  Q
    |||||||||||||||  ||||| |||| ||||  |||| |||||||||||||||||||||||| |||||    
T  26655097 aatatgcgagtagttttaattttaattggcatatgatgctaaaagataaagaaataacaaataatttaa 26655029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 15828575 - 15828507
Alignment:
Q  13 aatatgcgagtagttaaaatttgaatttgcat--gatgataaaagataaagaaataacaaatattttaa 79  Q
    |||||| |||| ||||||||||||||| | ||  |||| |||||||||||||||||||||||| |||||    
T  15828575 aatatgtgagttgttaaaatttgaattggaatatgatgctaaaagataaagaaataacaaataatttaa 15828507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 50960869 - 50960937
Alignment:
Q  13 aatatgcgagtagttaaaatttgaatttgcat--gatgataaaagataaagaaataacaaatattttaa 79  Q
    |||||| |||| |||||||||||||||  |||  |||| |||||||||||||||||||||||| |||||    
T  50960869 aatatgtgagtggttaaaatttgaattgacatatgatgctaaaagataaagaaataacaaataatttaa 50960937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 37437148 - 37437080
Alignment:
Q  13 aatatgcgagtagttaaaatttgaatttgc--atgatgataaaagataaagaaataacaaatattttaa 79  Q
    |||| ||||||||||||||||||||||  |  |||||| |||||||||||||||||  ||||| |||||    
T  37437148 aatacgcgagtagttaaaatttgaattgacatatgatgctaaaagataaagaaatagaaaataatttaa 37437080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University