View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_219 (Length: 247)
Name: NF20384_high_219
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_219 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 37749412 - 37749181
Alignment:
| Q |
1 |
ttgttattttattgcttggtggcattgttataagaagttccttactttttcttcttttttagcccctttcattctaataacaatccatgaatatgttgtg |
100 |
Q |
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| T |
37749412 |
ttgttattttattgcttggtggcattgttataagaagttccttactttttcttcttttttagcccctttcattctaataacaatccatgaatatgttgtg |
37749313 |
T |
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| Q |
101 |
tagtattttaaggaacaactctttctatggaaccatacctgaagaaattgtagacttgaaacaattggagattttggatttgggatataacaacttcagt |
200 |
Q |
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| T |
37749312 |
tagtattttaaggaacaactctttctatggaaccatacctgaagaaattgtagacttgaaacaattggagattttggatttgggatataacaacttcagt |
37749213 |
T |
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| Q |
201 |
ggacatctagatgctaattttggtcataatat |
232 |
Q |
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| T |
37749212 |
ggacatctagatgctaattttggtcataatat |
37749181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 87 - 232
Target Start/End: Original strand, 43006684 - 43006829
Alignment:
| Q |
87 |
atgaatatgttgtgtagtattttaaggaacaactctttctatggaaccatacctgaagaaattgtagacttgaaacaattggagattttggatttgggat |
186 |
Q |
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| T |
43006684 |
atgaatatgttgtgcagtattttaaggaacaactctttctatggtaccatacttgaagaagttgtaggcttaaaagaatttgagattttggatttgggtt |
43006783 |
T |
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| Q |
187 |
ataacaacttcagtggacatctagatgctaattttggtcataatat |
232 |
Q |
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| T |
43006784 |
acaacaactttagtggacatctagatgctaattttgagcataatat |
43006829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 35607012 - 35607073
Alignment:
| Q |
87 |
atgaatatgttgtgtagtattttaaggaacaactctttctatggaaccatacctgaagaaatt |
149 |
Q |
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|||||||||||||| | ||||||| | |||||||||||||||| ||||||| |||||||||| |
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| T |
35607012 |
atgaatatgttgtgcaatatttta-gcaacaactctttctatgacaccatacttgaagaaatt |
35607073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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