View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_220 (Length: 244)
Name: NF20384_high_220
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_220 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 36503740 - 36503519
Alignment:
| Q |
13 |
aatatattgcttcaattcaaaatcaaacgtagacacaatttatatttgcacaaagttgatcataattgagatttgaacttgaatagacgtaagtaaattt |
112 |
Q |
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| T |
36503740 |
aatatattgcttcaattcaaaatcaaacgtagacacaatttatatttgcacaaagttgatcataattgagatttgaacttgaatagacgtaagtaaattt |
36503641 |
T |
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| Q |
113 |
gtatgtgattaagatttaatttagtt---------taggatttgttcaaacttcattgcttccattgtacacaaaataaagctgannnnnnngtctctat |
203 |
Q |
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| T |
36503640 |
gtatgtgattacgatttaatttagtttaaatccgctaggatttgttcaaacttcattgcttccattgtacacaaaataaagctgatttttttgtctctat |
36503541 |
T |
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| Q |
204 |
attgttacaatctactgttttt |
225 |
Q |
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|||||||||||||||||||||| |
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| T |
36503540 |
attgttacaatctactgttttt |
36503519 |
T |
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