View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_high_229 (Length: 238)
Name: NF20384_high_229
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_229 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 2358378 - 2358548
Alignment:
| Q |
1 |
gttaagaactataatatatcattcatatctcaaacattatatgatataccaacaattaatattatagattttctttgacaaacttacatttttagattag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2358378 |
gttaagaactataatatatcattcatatctaaaacattatatgatataccaacaattaatattatagattttctttgacaaacttacatttttagattag |
2358477 |
T |
|
| Q |
101 |
ggaagtcaacatgcacacctccattcaaagaaagaaacaactaccaacccgaatgaaaaatttatcgtgaa |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2358478 |
ggaagtcaacatgcacacctccattcaaagaaagaaacaaccaccaacccgaatgaaaaatttatcgtgaa |
2358548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 2359399 - 2359432
Alignment:
| Q |
189 |
accctgtaactatattgaatttctgactatttat |
222 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
2359399 |
accctgtaactatattgaatttctaactatttat |
2359432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University