View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_23 (Length: 586)
Name: NF20384_high_23
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 13 - 571
Target Start/End: Original strand, 37064408 - 37064966
Alignment:
| Q |
13 |
gagatgaagggatagaaccgcgaaacatgttctcagctagaccaaggtattttaaattttcatgttgccctaaccaatcaggaatagattcatttagttc |
112 |
Q |
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| T |
37064408 |
gagatgaagggatagaaccgcgaaacatgttctcagctagaccaaggtattttaaattttcatgttgccctaaccaatcaggaatagattcatttagttc |
37064507 |
T |
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| Q |
113 |
attgttactcaaccttaaagtttcaagttttcgaagacttaacaagctctttggtatttgtccttttaaaaaattgaagctaaggtcaatatgggagata |
212 |
Q |
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| T |
37064508 |
attgttactcaaccttaaagtttcaagttttcgaagacttaacaagctctttggtatttgtccttttaaaaaattgaagctaaggtcaatatgggagata |
37064607 |
T |
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| Q |
213 |
ttcatatcgttgccatgttcaaacaaccaagcaggtaattcagaatcgaaatggtttgctgagagatcaagagttgcaagtgaattagtaaaactcacat |
312 |
Q |
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| T |
37064608 |
ttcatatcgttgccgtgttcaaacaaccaagcaggtaattcagaatcgaaatggtttgctgagagatcaagagttgcaagtgaattagtaaaactcacat |
37064707 |
T |
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| Q |
313 |
gcttaacggatgcaaagatatcggtcaaatgacaacttgataatctcagttctaacaatgatacatgcaacatatctatggactgaagccagtttgtttg |
412 |
Q |
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| T |
37064708 |
gcttaacggatgcaaagatatcggtcaaatgacaacttgataatctcagttctaacaatgatacatgcaacatatctatggactgaagccagtttgtttg |
37064807 |
T |
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| Q |
413 |
gttttgaagattaatttgactaaggtttagagatttgagtgaagaaaatttggaaagccaatgaagattatccaagtgaagatcatcgttaaaggataag |
512 |
Q |
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| T |
37064808 |
gttttgaagattaatttgactaaggtttagagatttgagtgaagaaaatttggaaagccaatgaagattatccaagtgaagatcatcgttaaaggataag |
37064907 |
T |
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| Q |
513 |
tctaggtactgaatattagacaaattattattattatgatcatttgattggttgaaact |
571 |
Q |
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| T |
37064908 |
tctaggtactgaatattagacaaattattattattatgatcatttgattggttgaaact |
37064966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 521
Target Start/End: Complemental strand, 15532002 - 15531946
Alignment:
| Q |
465 |
gaaagccaatgaagattatccaagtgaagatcatcgttaaaggataagtctaggtac |
521 |
Q |
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| T |
15532002 |
gaaagccaatcaagattatccatgtgaagaccaccatttaaggataagtcaaggtac |
15531946 |
T |
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