View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_high_235 (Length: 236)

Name: NF20384_high_235
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_high_235
NF20384_high_235
[»] chr8 (2 HSPs)
chr8 (1-211)||(9891547-9891757)
chr8 (17-99)||(17220198-17220280)
[»] chr4 (10 HSPs)
chr4 (1-189)||(3671048-3671236)
chr4 (19-182)||(52982885-52983048)
chr4 (17-156)||(54860810-54860949)
chr4 (17-171)||(55657369-55657523)
chr4 (17-182)||(55619009-55619173)
chr4 (17-182)||(55626313-55626477)
chr4 (17-163)||(54630369-54630515)
chr4 (17-173)||(55637265-55637421)
chr4 (18-150)||(55663621-55663753)
chr4 (59-170)||(50189997-50190108)
[»] chr2 (1 HSPs)
chr2 (17-199)||(13403672-13403854)
[»] chr1 (1 HSPs)
chr1 (63-188)||(37308569-37308694)
[»] chr7 (1 HSPs)
chr7 (63-148)||(46153223-46153308)


Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 9891547 - 9891757
Alignment:
Q  1 aaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactg 100  Q
    |||||||||||||||  ||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||     
T  9891547 aaaaccccggttacacaggagatgtcaacttgtatgctctgatgatagaggacgctgagggattggaaaagattgaaaacttgcagagtcatgacaacta 9891646  T
Q  101 tgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggttctcaacctggttttaac 200  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  9891647 tgaaatttatgggaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgccatctccaggcaatggttctcaacctggttttaac 9891746  T
Q  201 tttagaagcag 211  Q
    |||||| ||||    
T  9891747 tttagaggcag 9891757  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 17220198 - 17220280
Alignment:
Q  17 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaact 99  Q
    |||||||||||||| ||||||||  |||||||| || || | |||||||||||||||||| ||| |||||| |||||||||||    
T  17220198 gggagatgtcaacttgtatgctcaaatgatagaagatgctgagggattggaaaagattgataacatgcagaatcatgacaact 17220280  T

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Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 3671236 - 3671048
Alignment:
Q  1 aaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactg 100  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||     
T  3671236 aaaaccccggttacacgggagatgtcaacttgtatgctctgatgataggggacgcggagggattggaaaagattggaaacttgcagagtcatgacaacta 3671137  T
Q  101 tgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggttctcaac 189  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3671136 tgaaatttatgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggttctcaac 3671048  T

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Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 52983048 - 52982885
Alignment:
Q  19 gagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggc 118  Q
    |||||||||| | |||||||| |||||||||||| || | ||||||||||||||||||||||||||||||||||||||||  |||||||| |||||| ||    
T  52983048 gagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaagattgaaaacttgcagagtcatgacaacaatgaaatttatgagaatgc 52982949  T
Q  119 tgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt 182  Q
    ||| | |||||| ||||||||||||||||||||||||| |||||| ||||||||| || |||||    
T  52982948 tgttagaattctcgagacatattggttggaagatgaagatgagacactacctccaagccatggt 52982885  T

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Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 54860949 - 54860810
Alignment:
Q  17 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 116  Q
    |||||||||||||| |||||||| |||||||||||| || | |||||||||||||||||| ||| |||||| ||||||||||| |||||||| |||||||    
T  54860949 gggagatgtcaacttgtatgctcagatgatagaggatgctgagggattggaaaagattgataacatgcagaatcatgacaactatgaaatttatgagaag 54860850  T
Q  117 gctgtcaaaattcttgagacatattggttggaagatgaag 156  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  54860849 gctgttaaaattcttgagacatattggttggaagatgaag 54860810  T

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Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 55657523 - 55657369
Alignment:
Q  17 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 116  Q
    |||||||||||||| |||||||| ||||||||| || |  | ||||||||||||||| ||||||||||||||||||||||||  |||||||| |||||||    
T  55657523 gggagatgtcaacttgtatgctcagatgatagatgatgttgagggattggaaaagatcgaaaacttgcagagtcatgacaacaatgaaatttatgagaag 55657424  T
Q  117 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctc 171  Q
    ||||| |||||||||||||||||||||||||||||||  | |||||| |||||||    
T  55657423 gctgttaaaattcttgagacatattggttggaagatgttgatgagacactacctc 55657369  T

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Target: chr4; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 55619173 - 55619009
Alignment:
Q  17 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 116  Q
    |||||||||||||| |||||||| ||||||||| || || | |||||||||||| || ||||||||||||||||||||||||   ||||||| |||||||    
T  55619173 gggagatgtcaacttgtatgctcagatgatagatgatgctgagggattggaaaa-atcgaaaacttgcagagtcatgacaacaaagaaatttatgagaag 55619075  T
Q  117 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt 182  Q
    ||||| |||||||| |||||||||||||||||||||| || |||||| ||||||| |||| |||||    
T  55619074 gctgttaaaattctcgagacatattggttggaagatgtagatgagacactacctctaggccatggt 55619009  T

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Target: chr4; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 55626477 - 55626313
Alignment:
Q  17 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 116  Q
    |||||||||||||| |||||||| ||||||||| || || | |||||||||||| || ||||||||||||||||||||||||   ||||||| |||||||    
T  55626477 gggagatgtcaacttgtatgctcagatgatagatgatgctgagggattggaaaa-atcgaaaacttgcagagtcatgacaacaaagaaatttatgagaag 55626379  T
Q  117 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt 182  Q
    ||||| |||||||| |||||||||||||||||||||| || |||||| ||||||| |||| |||||    
T  55626378 gctgttaaaattctcgagacatattggttggaagatgtagatgagacactacctctaggccatggt 55626313  T

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Target: chr4; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 54630369 - 54630515
Alignment:
Q  17 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 116  Q
    |||||||||||| | |||||||| |||||||||||| |    ||||||||||||||||||||||||| | ||||||||  || | ||||||| |||||||    
T  54630369 gggagatgtcaatttgtatgctcagatgatagaggatgttaagggattggaaaagattgaaaacttggatagtcatgaagacagagaaatttatgagaag 54630468  T
Q  117 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagac 163  Q
    ||||  |||||||| |||| |||||||||||||||||||| ||||||    
T  54630469 gctgctaaaattctcgagagatattggttggaagatgaagatgagac 54630515  T

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Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 55637265 - 55637421
Alignment:
Q  17 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 116  Q
    |||||||||||||| ||||| || |||||||   ||||| |  || | || | |||||||||||||||||||||||||||||  ||||||| ||||||||    
T  55637265 gggagatgtcaacttgtatgttcagatgatacctgacgctgacggttgggtagagattgaaaacttgcagagtcatgacaacaatgaaattcgtgagaag 55637364  T
Q  117 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctcca 173  Q
    ||||| ||||||||||| |||||||||||  |||||||||  |||||  ||||||||    
T  55637365 gctgttaaaattcttgaaacatattggtttaaagatgaagacgagacagtacctcca 55637421  T

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Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 55663753 - 55663621
Alignment:
Q  18 ggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaagg 117  Q
    ||||||||||||| |||||||| ||||||||| || |  | |||||||||||||||||||||||||||||||||  || ||  |||||||| ||||||||    
T  55663753 ggagatgtcaacttgtatgctcagatgatagatgatgttgagggattggaaaagattgaaaacttgcagagtcacaaccacattgaaatttatgagaagg 55663654  T
Q  118 ctgtcaaaattcttgagacatattggttggaag 150  Q
    |||| | |||  | |||||||||||||||||||    
T  55663653 ctgttagaatcgtcgagacatattggttggaag 55663621  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 170
Target Start/End: Complemental strand, 50190108 - 50189997
Alignment:
Q  59 gggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggt 158  Q
    |||||| || ||||| |||||| |||| |||||||| |||   ||||| | |||||||||||| ||||||||||| |||||||||| | | ||||||| |    
T  50190108 gggatttgacaagatagaaaacctgcaaagtcatgataaccaagaaatatatgagaaggctgttaaaattcttgaaacatattggtcgaacgatgaagat 50190009  T
Q  159 gagacgctacct 170  Q
    |||| |||||||    
T  50190008 gagatgctacct 50189997  T

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Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 13403672 - 13403854
Alignment:
Q  17 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 116  Q
    |||||||||||||| |||||||| ||||||||| || |||| |||||||||||||||||| ||| |||||||||||||||||  ||||||||  ||||||    
T  13403672 gggagatgtcaacttgtatgctcagatgatagatgaggcggagggattggaaaagattgagaacctgcagagtcatgacaacaatgaaatttacgagaag 13403771  T
Q  117 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggttctcaacctggttttaa 199  Q
    ||||| |||||||| |||||||||||||||||||||||||  ||||| ||||| |||||| ||||||||||||||||||||||    
T  13403772 gctgttaaaattctcgagacatattggttggaagatgaagacgagacactaccaccaggcgatggttctcaacctggttttaa 13403854  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 188
Target Start/End: Complemental strand, 37308694 - 37308569
Alignment:
Q  63 ttggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgaga 162  Q
    ||||| || ||||| ||| | |||||||||||||||   || |||| ||| |||||||| || |||||||||||||| |||||||| || |||| |||||    
T  37308694 ttggagaaaattgagaacctccagagtcatgacaacacagagatttatgaaaaggctgtgaagattcttgagacatactggttggaggaagaagatgaga 37308595  T
Q  163 cgctacctccaggcaatggttctcaa 188  Q
    |  | ||||||||| ||| |||||||    
T  37308594 ccatgcctccaggcgatgcttctcaa 37308569  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 46153308 - 46153223
Alignment:
Q  63 ttggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttgga 148  Q
    ||||| || ||||| ||| | |||||||||||||||  ||| |||| ||| |||||||| || ||||| |||||||| ||||||||    
T  46153308 ttggagaaaattgagaacctccagagtcatgacaacaatgagatttatgaaaaggctgtgaagattctcgagacatactggttgga 46153223  T

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