View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_high_236 (Length: 236)

Name: NF20384_high_236
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_high_236
NF20384_high_236
[»] chr1 (2 HSPs)
chr1 (1-221)||(42883094-42883295)
chr1 (13-77)||(37260929-37260993)
[»] chr3 (7 HSPs)
chr3 (26-115)||(2652352-2652441)
chr3 (19-115)||(52311825-52311921)
chr3 (24-115)||(3540211-3540302)
chr3 (27-174)||(33148837-33148983)
chr3 (24-88)||(7546086-7546150)
chr3 (14-87)||(33450040-33450113)
chr3 (51-91)||(42950990-42951030)
[»] chr4 (2 HSPs)
chr4 (13-94)||(37576541-37576622)
chr4 (129-173)||(37577106-37577150)
[»] chr2 (5 HSPs)
chr2 (126-186)||(2831418-2831478)
chr2 (24-88)||(17797017-17797081)
chr2 (15-70)||(5037299-5037354)
chr2 (15-88)||(19984708-19984781)
chr2 (53-109)||(38147056-38147112)
[»] chr6 (3 HSPs)
chr6 (13-88)||(2559624-2559699)
chr6 (15-87)||(6819597-6819669)
chr6 (24-113)||(7203442-7203531)
[»] chr7 (4 HSPs)
chr7 (15-78)||(36325619-36325682)
chr7 (24-88)||(23344449-23344513)
chr7 (14-88)||(31852634-31852708)
chr7 (15-88)||(23345051-23345124)
[»] chr5 (3 HSPs)
chr5 (51-165)||(36581012-36581126)
chr5 (15-113)||(3758922-3759020)
chr5 (16-88)||(34708752-34708824)
[»] chr8 (1 HSPs)
chr8 (180-221)||(44619134-44619175)


Alignment Details
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42883094 - 42883295
Alignment:
Q  1 taattttaatggaagaattatgttctttacccaaacagttttgctcgtatccaaagtaaatgtccatattgcccctacgtgagttaacatgcgcggcgta 100  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| || | ||||||||||| ||||||| |||| ||||||||                   
T  42883094 taattttaatggaagaattctgctctttacccaaacagttttgctcatacctaaagtaaatgttcatattgtccctgcgtgagtt--------------- 42883178  T
Q  101 agttaactcacgctaattatattttttgaaaaaatcacattaaatcccaacgtaatttaactcacgttgattttggcttgatttttagcttctaaaaact 200  Q
        ||||||||||| ||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42883179 ----aactcacgctagttatattttttgaaaaaatcatattgaatcccaacgtaagttaactcacgttgattttggcttgatttttagcttctaaaaact 42883274  T
Q  201 agcaaaatatagagagaagga 221  Q
    |||||||||||||||||||||    
T  42883275 agcaaaatatagagagaagga 42883295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 37260993 - 37260929
Alignment:
Q  13 aagaattatgttctttacccaaacagttttgctcgtatccaaagtaaatgtccatattgccccta 77  Q
    |||||||||| ||||||||||||| ||||||| | |   ||||||||||||||| | ||||||||    
T  37260993 aagaattatgctctttacccaaacggttttgcccattctcaaagtaaatgtccaaaatgccccta 37260929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 2652352 - 2652441
Alignment:
Q  26 tttacccaaacagttttgctcgtatccaaagtaaatgtccatattgcccctacgtgagttaacatgcgcggcgtaagttaactcacgcta 115  Q
    ||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||| ||||||| ||||| |||| |||||||||||||||    
T  2652352 tttacccaaactgttttgctcgtttccaaagtaaatgtctatattgcccctacgtaagttaacttgcgctgcgtgagttaactcacgcta 2652441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 52311921 - 52311825
Alignment:
Q  19 tatgttctttacccaaacagttttgctcgtatccaaagtaaatgtccatattgcccctacgtgagttaacatgcgcggcgtaagttaactcacgcta 115  Q
    |||| |||||||| |||  |||||||||||  |||||||||||||| ||||||||||| ||| ||||||| ||||| |||| |||||| ||||||||    
T  52311921 tatgctctttaccaaaattgttttgctcgttcccaaagtaaatgtctatattgcccctgcgtaagttaacttgcgctgcgtgagttaagtcacgcta 52311825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 3540302 - 3540211
Alignment:
Q  24 tctttacccaaacagttttgctcgtatccaaagtaaatgtccatattgcccctacgtgagttaacatgcgcggcgtaagttaactcacgcta 115  Q
    |||||||| |||| |||||||||||  |||||||||||||||||||||| | | ||| ||||||| ||||  |||| |||||| ||||||||    
T  3540302 tctttaccaaaactgttttgctcgttcccaaagtaaatgtccatattgctcttgcgtaagttaacttgcggtgcgtgagttaagtcacgcta 3540211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 174
Target Start/End: Original strand, 33148837 - 33148983
Alignment:
Q  27 ttacccaaacagttttgctcgtatccaaagtaaatgtccatattgcccctacgtgagttaacatgcgcggcgtaagttaactcacgctaattatattttt 126  Q
    ||||||||||  ||||||||||  ||||||||||||| |||||||||  | ||||||||||| |||||  ||| | |||| |||||||| |||||  ||     
T  33148837 ttacccaaacgtttttgctcgttcccaaagtaaatgtacatattgcctttgcgtgagttaacttgcgctacgtgacttaagtcacgctagttata-attc 33148935  T
Q  127 tgaaaaaatcacattaaatcccaacgtaatttaactcacgttgatttt 174  Q
    || |||||| ||||| ||  ||||||| | ||||||||||||| ||||    
T  33148936 tgcaaaaatgacattgaaatccaacgtgagttaactcacgttggtttt 33148983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 7546086 - 7546150
Alignment:
Q  24 tctttacccaaacagttttgctcgtatccaaagtaaatgtccatattgcccctacgtgagttaac 88  Q
    ||||||||||||| |||| ||||||  |||||||||||||||||||||||| | ||||| |||||    
T  7546086 tctttacccaaactgtttcgctcgttcccaaagtaaatgtccatattgcccttgcgtgacttaac 7546150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 33450113 - 33450040
Alignment:
Q  14 agaattatgttctttacccaaacagttttgctcgtatccaaagtaaatgtccatattgcccctacgtgagttaa 87  Q
    |||||| || || |||||||||| ||||||||| |   |||| ||||||||||||||| |||| ||||||||||    
T  33450113 agaattctgctcattacccaaactgttttgctcattctcaaaataaatgtccatattgtccctgcgtgagttaa 33450040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 42951030 - 42950990
Alignment:
Q  51 ccaaagtaaatgtccatattgcccctacgtgagttaacatg 91  Q
    |||||||||||||||||||||||| |||||  |||||||||    
T  42951030 ccaaagtaaatgtccatattgcccatacgtatgttaacatg 42950990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 37576541 - 37576622
Alignment:
Q  13 aagaattatgttctttacccaaacagttttgctcgtatccaaagtaaatgtccatattgcccctacgtgagttaacatgcgc 94  Q
    ||||||| || || |||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||    
T  37576541 aagaattctgctcattacccaaacggttttgctcgtttccaaagtaaatgtccatattacccctacgtgagttaacttgcgc 37576622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 37577150 - 37577106
Alignment:
Q  129 aaaaaatcacattaaatcccaacgtaatttaactcacgttgattt 173  Q
    ||||||||||||| ||||||||||| | ||||||||| |||||||    
T  37577150 aaaaaatcacattgaatcccaacgtgagttaactcacattgattt 37577106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 2831478 - 2831418
Alignment:
Q  126 ttgaaaaaatcacattaaatcccaacgtaatttaactcacgttgattttggcttgattttt 186  Q
    |||||||||||||||| ||||||||||| | ||||||||||||||||||||||||| ||||    
T  2831478 ttgaaaaaatcacattgaatcccaacgtgagttaactcacgttgattttggcttgaatttt 2831418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 17797081 - 17797017
Alignment:
Q  24 tctttacccaaacagttttgctcgtatccaaagtaaatgtccatattgcccctacgtgagttaac 88  Q
    |||||||||||||| ||||||| ||  |||||||||||||||||||||||||| |||||||||||    
T  17797081 tctttacccaaacaattttgcttgttcccaaagtaaatgtccatattgcccctgcgtgagttaac 17797017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 5037299 - 5037354
Alignment:
Q  15 gaattatgttctttacccaaacagttttgctcgtatccaaagtaaatgtccatatt 70  Q
    ||||| || |||||||| |||| |||||| |||| |||||||||||||||||||||    
T  5037299 gaattctgctctttaccaaaacggttttgttcgtttccaaagtaaatgtccatatt 5037354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 19984781 - 19984708
Alignment:
Q  15 gaattatgttctttacccaaacagttttgctcgtatccaaagtaaatgtccatattgcccctacgtgagttaac 88  Q
    ||||| || ||||||||||||| ||| ||||||| || |||||||||| ||| | | ||||| |||||||||||    
T  19984781 gaattctgctctttacccaaacggttatgctcgtttctaaagtaaatgaccaaaatacccctgcgtgagttaac 19984708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 38147112 - 38147056
Alignment:
Q  53 aaagtaaatgtccatattgcccctacgtgagttaacatgcgcggcgtaagttaactc 109  Q
    ||||||||||| |||||| || || ||||||||||| ||||| |||| |||||||||    
T  38147112 aaagtaaatgttcatattacctctgcgtgagttaacttgcgctgcgtgagttaactc 38147056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 2559699 - 2559624
Alignment:
Q  13 aagaattatgttctttacccaaacagttttgctcgtatccaaagtaaatgtccatattgcccctacgtgagttaac 88  Q
    ||||||| || |||||||||||||  ||||||||||  ||||||||||||| |||||||| |||||||||||||||    
T  2559699 aagaattttgctctttacccaaacgattttgctcgttcccaaagtaaatgttcatattgctcctacgtgagttaac 2559624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 6819669 - 6819597
Alignment:
Q  15 gaattatgttctttacccaaacagttttgctcgtatccaaagtaaatgtccatattgcccctacgtgagttaa 87  Q
    ||||| || |||||||| ||||||||||||||||  ||||| |||||||||||||||||| |  |||||||||    
T  6819669 gaattctgctctttaccaaaacagttttgctcgttcccaaaataaatgtccatattgcccatgtgtgagttaa 6819597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 7203442 - 7203531
Alignment:
Q  24 tctttacccaaacagttttgctcgtatccaaagtaaatgtccatattgcccctacgtgagttaacatgcgcggcgtaagttaactcacgc 113  Q
    |||||||| |||| |||||||||||  |||||||||||||  |||||| |||| ||| ||||||| |||   |||| |||||| ||||||    
T  7203442 tctttaccaaaactgttttgctcgttcccaaagtaaatgtttatattgtccctgcgtaagttaacttgcattgcgtgagttaagtcacgc 7203531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 36325619 - 36325682
Alignment:
Q  15 gaattatgttctttacccaaacagttttgctcgtatccaaagtaaatgtccatattgcccctac 78  Q
    ||||| || ||||||| |||||||||||||||||   |||||||||||||||||||||||||||    
T  36325619 gaattctgctctttactcaaacagttttgctcgttctcaaagtaaatgtccatattgcccctac 36325682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 23344449 - 23344513
Alignment:
Q  24 tctttacccaaacagttttgctcgtatccaaagtaaatgtccatattgcccctacgtgagttaac 88  Q
    ||||||||||||| ||||||||| | |  |||||||||||||||||| ||| | |||||||||||    
T  23344449 tctttacccaaacggttttgctcatttttaaagtaaatgtccatattacccgtgcgtgagttaac 23344513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 31852634 - 31852708
Alignment:
Q  14 agaattatgttctttacccaaacagttttgctcgtatccaaagtaaatgtccatattgcccctacgtgagttaac 88  Q
    |||||| || || ||| |||||| ||||||||||| | |||||||||||| |||||| ||||| ||| |||||||    
T  31852634 agaattctgctcattatccaaacggttttgctcgttttcaaagtaaatgttcatattacccctgcgtaagttaac 31852708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 23345124 - 23345051
Alignment:
Q  15 gaattatgttctttacccaaacagttttgctcgtatccaaagtaaatgtccatattgcccctacgtgagttaac 88  Q
    |||||||| |||||||||||||  |||||||| |  ||||| ||||||| |||||||||| | ||| |||||||    
T  23345124 gaattatgctctttacccaaacgattttgctcattcccaaaataaatgttcatattgcccatgcgtaagttaac 23345051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 36581126 - 36581012
Alignment:
Q  51 ccaaagtaaatgtccatattgcccctacgtgagttaacatgcgcggcgtaagttaactcacgctaattatattttttgaaaaaatcacatt-aaatccca 149  Q
    |||||||||||||||||||| |||||  |||||||||| | ||| |||| | ||||||||||||| |||||  || || |||||| ||||| ||||||||    
T  36581126 ccaaagtaaatgtccatattacccctgtgtgagttaacttacgctgcgtgaattaactcacgctagttata-attatgcaaaaatgacattgaaatccca 36581028  T
Q  150 acgtaatttaactcac 165  Q
    |||| | |||||||||    
T  36581027 acgtgaattaactcac 36581012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 3758922 - 3759020
Alignment:
Q  15 gaattatgttctttacccaaacagttttgctcgtatccaaagtaaatgtccatattgcccctacgtgagttaacatgcgcggcgtaagttaactcacgc 113  Q
    ||||| || |||||||| |||| ||||| ||| |  ||||||||||||| ||||||  |||| ||||||||||||||  |  ||| |||||||||||||    
T  3758922 gaattctgctctttaccaaaacggttttactcattcccaaagtaaatgttcatattatccctgcgtgagttaacatgtactccgtgagttaactcacgc 3759020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 34708824 - 34708752
Alignment:
Q  16 aattatgttctttacccaaacagttttgctcgtatccaaagtaaatgtccatattgcccctacgtgagttaac 88  Q
    ||||||| ||||||| ||||| ||||| ||| | |||||| ||||||||||||||  |||| | |||||||||    
T  34708824 aattatgctctttactcaaacggttttactcatttccaaaataaatgtccatattatccctgcatgagttaac 34708752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 44619134 - 44619175
Alignment:
Q  180 gatttttagcttctaaaaactagcaaaatatagagagaagga 221  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  44619134 gatttctagcttctaaaaactagcaaaatatagagagaagga 44619175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University